LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso5g1321	ATGCGAACTTCATGGGCTGATTTGGCTGCAAATTCTGCAGCTGAGAACGCAGGTCCTGGTTCTTCTGCTAACAATGTGGGAACTGGTAGCACTTTAGCTCCTACGCGACCTGTTTATGTACCTCCCCATCTGAGGAACCGTCAGCCAGCGGCAGAATCCCCTGCCCCTGCTCCAGCATATAGTGGCCCTTCCTCTGGTGCTGGTAATTCTGGATCCCGTTATGCTGCACCCAGAAATGATTATCGTCCTGGGTATGGTGGTGGTGGTGGTGGACGCACAGGTGGATGGGGAAACAAAAGTGGTGGATGGGATCGTGGCAGGGAGCGGGAAGTCAATCCCTTTGAAGAAGAGGATAATGCTGAAGAGGCATTCAGTGAGCAGGAGAATACAGGAATAAATTTTGATGCATATGAAGACATTCCAGTGGAGACCAGTGGTGACAATGTGCCCCCACCTGTGAATACGTTTGCAGAGATTGATTTGGGTGAAGCACTTAATCAGAACATAAGAAGGTGCAAATATGTGAGGCCAACACCTGTTCAGCGGCATGCTATACCAATATCCCTAGCTGGACGGGATTTGATGGCTTGTGCCCAGACTGGTTCTGGAAAGACAGCTGCATTCTGTTTCCCGATTATCAGTGGAATCATGAGGGGCCAATCTGTGCAGAGGCCACCTCGTGGGGTGCGTACAGTGTATCCGCTTGCGCTTGTTCTTTCTCCAACGAGGGAGTTATCAATGCAAATACATGAAGAGGCTAGGAAATTTTCATACCAAACTGGGGTTAGGGTGGTTGTTGCATATGGTGGAGCACCAATAAACCAGCAGCTGCGGGATCTTGAAAGAGGGGTGGACATTCTTGTTGCAACTCCTGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTGCAGATGATTCGATATCTGGCCTTAGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCGCAAATAAGGAAGATTGTAGAGCAAATGGACATGCCTCCACCAGGTGCCAGACAGACTATGTTGTTCAGTGCAACATTTCCAAAAGAGATACAGAGATTGGCTTCTGATTTCCTTTCAAATTATATTTTCCTTGCTGTTGGAAGAGTGGGTTCAAGTACTGATTTAATTGTCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTAATGGACCTTCTTCATGCACAGAGGGCAAACGGTGTACAAGGAAAGCAAGCTTTAACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCGCTGGAACACTGGTTGTGTCTTAATGGTTTTCCTGCAACTACTATTCATGGTGACAGGTCACAGCAGGAAAGAGAATTAGCCTTGAGGTCATTTAAAAGTGGTAACACCCCCATATTGGTTGCCACCGATGTTGCTGCACGTGGTCTTGATATTCCCCATGTTGCTCATGTGGTCAACTTTGACCTGCCAAATGACATTGATGATTATGTACACCGAATTGGAAGAACAGGGCGAGCTGGAAAGAAAGGTCTTGCAACTGCATTCTTTAATGACAACAATTCATCACTAGCTAGAGCTTTATCAGAACTGATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTCTCACGGTTTGCTGCTCGATCTTCTTTTGGTGGAGGCAGGAACCGCCGATCAGGCGGTCGATTTGGTGGTCGTGACTTCCGAAGAGATGGCTCTTTCAGTAGAGGTTCTTCAGATTACTACAGTGCAGGAAACGGCAGTGGTGGTGGATATGGAGGCTCGGGTGGGTATGCTGGTGGAGGGTATGGTCCTGGGGTCACGAGTGCTTGGGATTGA	1845	0.477	MRTSWADLAANSAAENAGPGSSANNVGTGSTLAPTRPVYVPPHLRNRQPAAESPAPAPAYSGPSSGAGNSGSRYAAPRNDYRPGYGGGGGGRTGGWGNKSGGWDRGREREVNPFEEEDNAEEAFSEQENTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGEALNQNIRRCKYVRPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQSVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNSSLARALSELMQEANQEVPAWLSRFAARSSFGGGRNRRSGGRFGGRDFRRDGSFSRGSSDYYSAGNGSGGGYGGSGGYAGGGYGPGVTSAWD*	615

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso5g1321	614	CDD	DEADc_DDX3_DDX4	155	376	IPR044763	GO:0003724\|GO:0005524
	Gso5g1321	614	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	381	548	IPR001650	-
	Gso5g1321	614	CDD	SF2_C_DEAD	382	518	-	-
	Gso5g1321	614	SMART	helicmild6	428	509	IPR001650	-
	Gso5g1321	614	Gene3D	-	109	372	IPR027417	-
	Gso5g1321	614	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	235	526	IPR027417	-
	Gso5g1321	614	MobiDBLite	consensus disorder prediction	1	107	-	-
	Gso5g1321	614	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	185	370	IPR014001	-
	Gso5g1321	614	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED	49	581	-	-
	Gso5g1321	614	Pfam	DEAD/DEAH box helicase	178	359	IPR011545	GO:0003676\|GO:0005524
	Gso5g1321	614	Gene3D	-	373	552	IPR027417	-
	Gso5g1321	614	SMART	ultradead3	173	385	IPR014001	-
	Gso5g1321	614	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	49	581	-	-
	Gso5g1321	614	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	154	182	IPR014014	GO:0003724
	Gso5g1321	614	MobiDBLite	consensus disorder prediction	1	32	-	-
	Gso5g1321	614	Pfam	Helicase conserved C-terminal domain	394	509	IPR001650	-
	Gso5g1321	614	MobiDBLite	consensus disorder prediction	553	573	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso5g1321	Gso-Chr5	36713863	36721125	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso5g1321	152	541	Eukaryotic Initiation Factors Gene Family	AT3G19760	31.969	1.99e-62	210

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso5g1321	K11594		-	gmx:100781743	1035.02