Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1295 ATGGACGGTGCGCCACAATCCGCCGGTGCCGGAGGTCCGGCGCCGTTCCTTCTGAAGACCTACGACATGGTGGACGATGCCTCCACCAACGACATCGTTTCGTGGAGCTCTACCAACAACAGCTTCGTCGTGTGGAACCCTCCCGAGTTCGCTCGCCTCCTTCTCCCGACCTATTTCAAGCACAGCAACTTCTCCAGCTTCATCCGTCAGCTCAATACCTACGGATTTCGAAAAATACATCCAGAGCGATGGGAATTTGCTAATGATGAGTTTCTGAAAGATCAGAAGCATCTTCTTAAGAATATATATCGCAGGAAACCTATCCACAGTCATAGTCATCCTCCAGGTTCACTTGTAGATCCAGAAAGGGCAGCATTTGAGGAAGAAATAGACAAACTTTCCCGTGAGAAAACTTCTCTTGAATCCAATATTTATAACTTCAAACAACATCAGTCAACAGCAAAGCCTAAGCTAGAAGATTTTCTGCAGCGATTAGATGGTATTGAGCAGAGGCAGAAACAATTGCTGAACTTCTTTGAGAAGGCTCTTCAGAATCCTACTTTTGTTGAACATCTTTCACGCAAAATCGAGTCCATGGATTTATCTGCATATAAGAAAAGGCGATTGCCTCAGGTTGATCATGTGCAACCAGTTGCCGAAAGTAGCTTGGTGGACAGTCATAGCAATTTTAGAATGGAATTTGGAAATGTTTTCCATCAAGATTTCTCGAATAAACTTAGACTGGAGTTGTCACCAGCTGTTTCTGATATGAACTTGGTATCACGTAGCACACAGAGTTCAAATGAAGATGGGGAAAGCCCACAGAAAAAGCTGTCTGAAGTAGAACCAAAAGGAGTGCAGACAAGAACAGCTCTTACATTTGCACCTGAAACATTAGAGCTTGCAGATACTGGGGCTTCTTTTACTTTTAAGATGGATTCATGTTTATCGCGAAAAACAACAACTGCTGAGAGCTCAAAACTGATCTCTTTGGAGCCAAGTAGTGAAGAAGGTGATAGTTTATCCTGCCAACTAAACTTAACTCTGGCATCTTGTCCATTGCAAGTCAACAGAAATTCATACTCAGCCAGATCACCCCAAATTGACTGTCAAGAAATTGGAAAATTGGCGGAATCAAGATTTTTTGCCAATGGTAAAGAATCTGATAGTGGTGTTTCCTCAAACCTAAATGTAGCTGCTGAGGCTACCAATTTAGCTTCATCACAGGAGGATCCAAGTAACAACCAAGTTAACCCAGCTCCTCCAGACAGGGTGAATGATGTTTTCTGGGAACAGTTTCTTACCGAAAGGCCAGGCTGTTCTGACAATGAAGAGGCAATGTCCAACTACCGAGCAAACCCGCATGATGAACAAGACGAAGGGCGGTCAGCTCATGGAATCTCTAGAAACATTAAGAACATGGATCAACTCACACTTTGA 1440 0.4354 MDGAPQSAGAGGPAPFLLKTYDMVDDASTNDIVSWSSTNNSFVVWNPPEFARLLLPTYFKHSNFSSFIRQLNTYGFRKIHPERWEFANDEFLKDQKHLLKNIYRRKPIHSHSHPPGSLVDPERAAFEEEIDKLSREKTSLESNIYNFKQHQSTAKPKLEDFLQRLDGIEQRQKQLLNFFEKALQNPTFVEHLSRKIESMDLSAYKKRRLPQVDHVQPVAESSLVDSHSNFRMEFGNVFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDGESPQKKLSEVEPKGVQTRTALTFAPETLELADTGASFTFKMDSCLSRKTTTAESSKLISLEPSSEEGDSLSCQLNLTLASCPLQVNRNSYSARSPQIDCQEIGKLAESRFFANGKESDSGVSSNLNVAAEATNLASSQEDPSNNQVNPAPPDRVNDVFWEQFLTERPGCSDNEEAMSNYRANPHDEQDEGRSAHGISRNIKNMDQLTL* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1295 479 SMART hsfneu3 12 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso5g1295 479 PRINTS Heat shock factor (HSF) domain signature 16 39 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso5g1295 479 PRINTS Heat shock factor (HSF) domain signature 54 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso5g1295 479 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso5g1295 479 MobiDBLite consensus disorder prediction 405 421 - -
Gso5g1295 479 Pfam HSF-type DNA-binding 16 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso5g1295 479 Coils Coil 123 143 - -
Gso5g1295 479 MobiDBLite consensus disorder prediction 260 284 - -
Gso5g1295 479 MobiDBLite consensus disorder prediction 439 479 - -
Gso5g1295 479 Gene3D - 11 106 IPR036388 -
Gso5g1295 479 ProSitePatterns HSF-type DNA-binding domain signature. 55 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso5g1295 479 MobiDBLite consensus disorder prediction 405 424 - -
Gso5g1295 479 MobiDBLite consensus disorder prediction 449 466 - -
Gso5g1295 479 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 475 IPR027725 -
Gso5g1295 479 SUPERFAMILY "Winged helix" DNA-binding domain 12 105 IPR036390 -
Gso5g1295 479 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 9 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1295 Gso-Chr5 36453607 36458558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1295 16 479 HSF AT4G13980 54.565 1.44e-166 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso5g1295 HSF_DNA-bind 7.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1295 K09419 - gmx:100816484 949.118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1295 5 36453607 36458558 Gso5g1295 5 36453607 36458558 ECH