Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1286 ATGTCTCTCCCCAAAACCCTACTTTCTCTCTCCCTTCTCTTCGCGATCGCGATCACCGCAGTAACCGGCGATGACGCGGCGGTGATGTCGAATTTTCTCATATCCCTCACTCCACCGCCCTCCGGCTGGTCTCAAACAACCCCATTCTGCCAATGGAAGGGAATCCAATGCGATTCTTCGAGGCACGTGACCAGCATAAGCCTCGCTTCGCAGTCCCTCACCGGAACACTCCCCTCGGATCTCAATTCCCTCTCTCAACTCCGCACTCTCTCTCTCCAAGACAATTCTCTCTCCGGCACCCTCCCTTCCCTCTCCAACCTCTCATTCCTCCAAACCGCGTACTTAAACCGCAACAACTTCACCTCCGTGCCCCCCTCCGCCTTCTCCTCCCTAACCTCCCTCCAAACCCTCAGCCTCGGCTCCAACCCTACCCTCCAACCCTGGTCCTTCCCCACCGACCTCACTTCCTCCGTTAACCTAATCGACCTCGACCTCGCCACCGTAACCCTCACCGGTCCCTTACCAGACATTTTCGACAAATTCACCTCTCTTCAACACCTTCGCCTCTCTTACAACAACCTCACCGGTAATTTACCCGCCTCTTTCGCCGTCGCCGACAATATCGCAACCCTCTGGCTCAACAACCAGGCCGCCGGCTTGTCCGGTACCCTCCAGGTCCTCTCCAACATGACAGCATTAAAGCAGGCCTGGCTCAATAAGAATCAGTTCACTGGTTCCTTACCGGATTTGTCGCAATGCAAGGCTTTGTCTGACTTGCAGCTTAGGGATAACCAGTTAACTGGTGTGGTTCCCGCTTCCTTGACGAGTCTTCCGAGTTTGAAGAAAGTTTCTCTGGATAACAATGAGCTTCAGGGGCCCGTGCCCGTGTTTGGGAAAGGTGTGAATTTTACTCTCGATGGGATTAATAGCTTTTGTCTTGACACTCCTGGGAATTGTGATCCCAGGGTGATGGTTTTGCTGCGGATTGCCGAGGCGTTCGGTTATCCGATTCGGTTGGCGGAATCGTGGAAAGGGAATGATCCTTGTGATGGTTGGAACTATGTTGTGTGTGCTGCCGGGAAGATTATCACTGTCAATTTCGAGAAACAGGGTTTGCAGGGTACCATCTCCCCTGCATTTGCCAATTTGACTGACTTGAGGAGCTTGTTTCTCAATGGGAATAATTTGACTGGTTCTATACCTGAGAGTTTGACTACTTTGTCTCAGCTTCAGACTCTTGATGTGTCTGATAACAACCTCTCTGGATTGGTTCCCAAGTTCCCGCCAAAGGTGAAGTTGGTGACTGCGGGAAATGCTTTGCTTGGGAAAGCTCTTAGTCCTGGAGGTGGACCAAATGGAACTACTCCTTCAGGGTCTTCGACTGGTGGAAGTGGCAGTGAATCCGCAAAGGGTAGTTCTTTGTTGTCGCCGGGTTGGATTGCTGGTATAGTTGTTATTGTGTTGTTTTTTATTGCAGTGGTGTTGTTTGTGTCTTGGAAGTGTTTTGTCAACAGGCGGCAGGGGAAGTTCAGTAGGGTTAATGGTCGTGAAAATGGGAAAGGAATTTTTAAACCTGATGCTGCCCATGTTTCTAATGGATATGGTGGTGTTCCCAGTGAGTTGCAAAGCCAGAGCAGTGGTGATCGCAGTGACCTTCAGGCTTTAGATGGTCCAACGTTTTCGATCCAAGTTCTTCAACAAGTGACGAATAATTTCAGCGAGGAGAACATTTTAGGCAGGGGAGGGTTTGGAGTAGTTTATAAGGGGCAGTTGCATGATGGAACAAAAATTGCTGTCAAGAGGATGGAATCTGTTGCAATGGGTAACAAAGGACTGAAAGAGTTCGAAGCAGAGATTGCAGTTCTTAGTAAAGTTAGGCATAGACATTTGGTTGCTCTTTTAGGGTATTGCATCAATGGCATTGAAAGGCTTTTGGTCTATGAGTATATGCCTCAAGGTACGTTAACACAGCACCTGTTTGAATGGCAGGAGCAAGGCTATGTTCCTTTGACTTGGAAACAAAGGGTAGTAATAGCTTTGGATGTAGCGCGGGGGGTGGAATACTTGCACAGTTTAGCTCAGCAAAGCTTCATTCATAGAGACTTAAAACCCTCAAACATACTACTAGGTGATGACATGAGAGCAAAGGTTGCTGATTTTGGTTTGGTTAAAAATGCACCAGATGGGAAGTATTCTGTTGAGACACGGTTGGCTGGAACATTTGGATATCTTGCACCTGAGTATGCAGCTACTGGAAGAGTGACAACCAAAGTGGATATTTATGCATTTGGAATAGTTTTGATGGAACTTATCACCGGTAGAAAGGCATTGGATGATACTGTGCCAGATGAAAGGTCTCACTTGGTTACATGGTTCCGTAGGGTACTCATTAACAAGGAAAACATTCCAAAGGCAATTGATCAAACTCTCAATCCTGACGAGGAAACCATGGAGAGCATATATAAAGTGGCTGAGCTGGCAGGCCATTGCACTGCTCGTGAACCATACCAAAGGCCGGATATGGGCCATGCAGTGAACGTCTTGGTTCCTCTTGTGGAGCAATGGAAACCTTCTAGCCACGACGAAGAAGAGGACGGCTCTGGTGGTGACCTGCAAATGAGCCTTCCTCAAGCTCTACGAAGGTGGCAAGCCAATGAAGGCACTTCCTCAATATTTAATGACATTTCCATCTCACAAACCCAATCAAGCATCCCCTGTAAACCTGTTGGATTTGCAGACACCTTTGATTCAATGGATTGCCGGTAG 2766 0.483 MSLPKTLLSLSLLFAIAITAVTGDDAAVMSNFLISLTPPPSGWSQTTPFCQWKGIQCDSSRHVTSISLASQSLTGTLPSDLNSLSQLRTLSLQDNSLSGTLPSLSNLSFLQTAYLNRNNFTSVPPSAFSSLTSLQTLSLGSNPTLQPWSFPTDLTSSVNLIDLDLATVTLTGPLPDIFDKFTSLQHLRLSYNNLTGNLPASFAVADNIATLWLNNQAAGLSGTLQVLSNMTALKQAWLNKNQFTGSLPDLSQCKALSDLQLRDNQLTGVVPASLTSLPSLKKVSLDNNELQGPVPVFGKGVNFTLDGINSFCLDTPGNCDPRVMVLLRIAEAFGYPIRLAESWKGNDPCDGWNYVVCAAGKIITVNFEKQGLQGTISPAFANLTDLRSLFLNGNNLTGSIPESLTTLSQLQTLDVSDNNLSGLVPKFPPKVKLVTAGNALLGKALSPGGGPNGTTPSGSSTGGSGSESAKGSSLLSPGWIAGIVVIVLFFIAVVLFVSWKCFVNRRQGKFSRVNGRENGKGIFKPDAAHVSNGYGGVPSELQSQSSGDRSDLQALDGPTFSIQVLQQVTNNFSEENILGRGGFGVVYKGQLHDGTKIAVKRMESVAMGNKGLKEFEAEIAVLSKVRHRHLVALLGYCINGIERLLVYEYMPQGTLTQHLFEWQEQGYVPLTWKQRVVIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDIYAFGIVLMELITGRKALDDTVPDERSHLVTWFRRVLINKENIPKAIDQTLNPDEETMESIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPSSHDEEEDGSGGDLQMSLPQALRRWQANEGTSSIFNDISISQTQSSIPCKPVGFADTFDSMDCR* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1286 921 Pfam Leucine rich repeat 379 420 IPR001611 GO:0005515
Gso5g1286 921 ProSitePatterns Serine/Threonine protein kinases active-site signature. 697 709 IPR008271 GO:0004672|GO:0006468
Gso5g1286 921 SMART LRR_typ_2 107 130 IPR003591 -
Gso5g1286 921 SMART LRR_typ_2 383 406 IPR003591 -
Gso5g1286 921 SMART LRR_typ_2 181 204 IPR003591 -
Gso5g1286 921 SMART LRR_typ_2 407 429 IPR003591 -
Gso5g1286 921 SMART LRR_typ_2 277 300 IPR003591 -
Gso5g1286 921 SMART LRR_typ_2 131 152 IPR003591 -
Gso5g1286 921 Pfam Protein tyrosine and serine/threonine kinase 575 846 IPR001245 GO:0004672|GO:0006468
Gso5g1286 921 Pfam Leucine Rich Repeat 183 203 IPR001611 GO:0005515
Gso5g1286 921 Gene3D Ribonuclease Inhibitor 321 444 IPR032675 -
Gso5g1286 921 ProSiteProfiles Protein kinase domain profile. 572 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1286 921 SUPERFAMILY Protein kinase-like (PK-like) 555 848 IPR011009 -
Gso5g1286 921 PANTHER RECEPTOR PROTEIN KINASE TMK1-RELATED 7 921 - -
Gso5g1286 921 MobiDBLite consensus disorder prediction 450 468 - -
Gso5g1286 921 ProSitePatterns Protein kinases ATP-binding region signature. 578 600 IPR017441 GO:0005524
Gso5g1286 921 SUPERFAMILY L domain-like 33 431 - -
Gso5g1286 921 Gene3D Phosphorylase Kinase; domain 1 538 649 - -
Gso5g1286 921 ProSiteProfiles Leucine-rich repeat profile. 86 108 IPR001611 GO:0005515
Gso5g1286 921 CDD STKc_IRAK 578 851 - -
Gso5g1286 921 Gene3D Transferase(Phosphotransferase) domain 1 650 869 - -
Gso5g1286 921 Pfam Leucine rich repeat N-terminal domain 326 357 IPR013210 -
Gso5g1286 921 Pfam Leucine rich repeat N-terminal domain 24 58 IPR013210 -
Gso5g1286 921 SMART serkin_6 572 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1286 921 Gene3D Ribonuclease Inhibitor 25 315 IPR032675 -
Gso5g1286 921 MobiDBLite consensus disorder prediction 444 468 - -
Gso5g1286 921 PANTHER OSJNBA0070M12.3 PROTEIN 7 921 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1286 Gso-Chr5 36376025 36380251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1286 63 867 Receptor kinase-like Gene Family AT1G55610 31.148 1.65e-93 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Gso5g1286 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1286 - - gmx:100286794 1742.63