Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1280 ATGGATAACCAGGATCAAAGAAGAACTCACACTGCAGGACACGAGAGTCATGGAGTTCATTCGTGTCACAAATGTGGATGGCCATTTCCAAATCCACATCCGAGTGCCAAGCACAGGCGTGCTCACAAGAAGATCTGTGGAACCATTGAAGGTTACAAACGGTCTGCCTCCGAGGGACAACCCCATTTGAATGGCTCAGATGATGAACATGTTTCTGATGATGATCACAAAACACCAGGTCCAAAATCCTTGGAGACAGGCAACAATGAGAAGGGCAATGAAGGAAATGGAGAAAAATTAATTAGATCAGAAGATGAGGTGTTTTCGGATGCAGTTGCAGACTTTTTGGATAGTGGATCGAATCCAGAAATTAAGGAACGGTTGCAAGATAATTTGGACTCAGGTGCTAATGTGGAAAGGGTTGACATAAAAGAAACAAATTTTTCAGGGTCTTCTGAGGGCAAAGATTTCAATGCTGCAGATGCAAGTCAGTTTATTGACAAGTCAACTGATGACAGCCAAATTCAAAATCTTAATATTTTTCAAAATGAAAGTGTTGAAGTGGGAACCGCGGTGGAGTTGCAAGGTCAATTGTCATGCCCTACTGTGGATCCATTGTCAAGTTCCATTGCAGACTTGAGGACTGAAGAATCAACTATTGTGGATAGTGATGTTTTTTTTGGTTTGTCAAGTGACTCACTTCTTGGTGAAACTGAAGCCATGCCTGATATATTGCCAGAAAAGAAAATCCATGCTGTTGAGAATGTGACAGATTGCAGTTTGATATCTGTTGCAAAGGAAACTAATTTTAAAGAGAAGGATGAGATTAGTTCTGCTGTACATGTGGTTGAAATTGTGGAATCATCTGATAATGGTGTAGGTGAAGCATGTGAAGAAGTGTCTAAAATAGCAGTTAGTGATGCAGTTTCTTTGGATTATCAAGTGGGTGATGGAGCTGATCATCTGAAGGAAAATAATGGTGCTGAGATTAATTCCTACAGAGATGTGGTTGAAATTGTGGAATCATCTGATAAAGTTGTAGGTGAAACGAGTGAAGAAGTGTCTAAAATAGCAGTTAGTGATGTAGTTTCCTTAGATCATCAAGTGGGTGATGGAGCTGTTCATCTGAAGGAAAAGAACGGTGCTGAGTTCCTTTCTTTGTTGCCCCCAGATAACCTTCCTCTTGAGTTAAACTCAGTTGTGATTACAAATGATGCTCAGGGAGACTCTGCATATATGATACAGTTTGCTACTTCCAGTGATAACAAAAATTTGCAGGAAAAGGGAGAAGGAAATGTTAATGTTAATCCTCTTCCTACATATGATGATAGATCTGATGAAGCACATCCTCGGAGTGAGTATGGGGACTTTAAAGATCTCGAAGGAGTGGCATACCAAAATCCTTTCCTACAATCATCTGAGTCATTGGAATATGAGGCAGATGACTTGAAGGACAAAGTTAGTGAGGAAAATAAATTTCATTTTGACGCAAACCAATTGAGTGAAAAAAGTGACATCCTCTCTCTAGATATGGATGTTATAGATAATAGCATGAAGATGGAGCCAGTCAACAGTGAGCCTACACCTAAAGAAATGCATGCCGAAGAGTGTACTGAAGTTTCTCCAGCCAAGGTCACAGTTGAATGCCATCAAAGATCAGATGACATTGATGCCTCTAGGAATGCTACAAAAACTGAGACAAATGAAATTCATATGGTTCACTTTTCTGAAGAGCATGGATCTGATGACACGTGTAAAAATTCCCAGCAGATAAGTTTACCAGAAGGTAGTTTAATGGCCTCTTCTAATGAGAGTCAGAGGGATGAATCCTTTGGGTGTGCAACTAGTGAAACAACTAGGGCAATTAACATAAACAGCACAAGTCATCATGAGGTAAAAATAACTGAAATAAAAGATGTAACTTCAGATGGCAAGGTTGTAGGATCTAATTTAGAAAATGATATTGAAATTATATTGAAAGATCTTCAACCCAATGACATCTTGCAATCTGAAGTCAAGCAATCAGATGACTTATTTAAGAGTGACTGCACTGGTAAGAGTGATGCTGCTGGTGAAATGGGTAAAAATGAACATGATAGTCCTGATGCTCAATGCATGGAAAGGCTCATTGTGAGTGATACTTCATTGCCTAAATCTGCTACCAGTCATTTTGAAAGCCCAGCTATTTCAGAGTCTTCAGACATTGTGGATGATGGGCCTGTGAACAAGTCAAATGGTACAGAGTGCAGAAATACAAATCCACTACCAGGTGCCCAGAAAGACATAAAAGAAGATGAAGTCTATATTAATATCAAACTAAATGAAGAATATAACAAGTCTGTTGATGTTGATACTCCTACCGAGTCACATCAAGCAGAAGATGCTGGACTATTAGTGAAGGCTGCAGAAGACCTTGCTAGGGAGTATACATCTCCTTTAACTACTGAACCTTCTGCTCAGCCTGACAGGGAAGTGTCCGGACTTACTGCTGTGCCTGTTCAAGATCAAGCTGGTAATAACTTGGGTAAACTTGGTTCATCCAGAGTTGATGCTTCAGTTGAGTCAGGTAGCCAGTGTGACAGTTTGGAAGGCATCTGGGGCTCTGTTTCAGTTCTGTCAATTCAATCCGATGCACCAGCTGTTATTGATGCTGAAACCTTGCCATCAACTGGCTTGCTGGCATCAACAGAAGCAGGGAAATCAAACTTCAACGACTCAAAAGCTACACCTGACAGACAGCAGTCTGGAAAATCAGAAATGTTTGAAGCACCATCTTTCATGACATTGGTTGATCCTGGTCAGGTTAGCCCAAAAGCCAATGCTTCTGAAGTCCAGAAGGGACAGAACACACAACAGCCAGATTCCACTTCACAGGCTGCTTGGTTTCCCACTCTTACACAAGTTGTCAATGAGTCTCAAGGGAGAAAGAAGAATGAAGAAATAATAGCCAAGGTGACAAACTGGAGCGCTAGTAAGGAGCACACTCCTCTTAAGAGCCTCTTAGGTGAGGCTGCCCACAGCAGCAAGCCAAGATCTCCAAAAATGGAAGAAAAATCAGTGAGTCAGAAGAGTGGTAAAGTTCCGGAAAAGAATGGTTCTGGGTTGACAACTGTTAACTCCATTCTGGGTCCTGAATCCCCTGTGGCTCAAGTGGTAAAAGGAGAGGTTGCAAAAGAATGGAACTCTCCAGCAAGATATCCTGCTGATATCAAGAGAGAAAAAAGGAAAGTTAAGAGCAGACCATACTGGATACAATTGGTATGCTGCACGTCTGTCGGTCCTCAGCGAAGGTAG 3294 0.4123 MDNQDQRRTHTAGHESHGVHSCHKCGWPFPNPHPSAKHRRAHKKICGTIEGYKRSASEGQPHLNGSDDEHVSDDDHKTPGPKSLETGNNEKGNEGNGEKLIRSEDEVFSDAVADFLDSGSNPEIKERLQDNLDSGANVERVDIKETNFSGSSEGKDFNAADASQFIDKSTDDSQIQNLNIFQNESVEVGTAVELQGQLSCPTVDPLSSSIADLRTEESTIVDSDVFFGLSSDSLLGETEAMPDILPEKKIHAVENVTDCSLISVAKETNFKEKDEISSAVHVVEIVESSDNGVGEACEEVSKIAVSDAVSLDYQVGDGADHLKENNGAEINSYRDVVEIVESSDKVVGETSEEVSKIAVSDVVSLDHQVGDGAVHLKEKNGAEFLSLLPPDNLPLELNSVVITNDAQGDSAYMIQFATSSDNKNLQEKGEGNVNVNPLPTYDDRSDEAHPRSEYGDFKDLEGVAYQNPFLQSSESLEYEADDLKDKVSEENKFHFDANQLSEKSDILSLDMDVIDNSMKMEPVNSEPTPKEMHAEECTEVSPAKVTVECHQRSDDIDASRNATKTETNEIHMVHFSEEHGSDDTCKNSQQISLPEGSLMASSNESQRDESFGCATSETTRAININSTSHHEVKITEIKDVTSDGKVVGSNLENDIEIILKDLQPNDILQSEVKQSDDLFKSDCTGKSDAAGEMGKNEHDSPDAQCMERLIVSDTSLPKSATSHFESPAISESSDIVDDGPVNKSNGTECRNTNPLPGAQKDIKEDEVYINIKLNEEYNKSVDVDTPTESHQAEDAGLLVKAAEDLAREYTSPLTTEPSAQPDREVSGLTAVPVQDQAGNNLGKLGSSRVDASVESGSQCDSLEGIWGSVSVLSIQSDAPAVIDAETLPSTGLLASTEAGKSNFNDSKATPDRQQSGKSEMFEAPSFMTLVDPGQVSPKANASEVQKGQNTQQPDSTSQAAWFPTLTQVVNESQGRKKNEEIIAKVTNWSASKEHTPLKSLLGEAAHSSKPRSPKMEEKSVSQKSGKVPEKNGSGLTTVNSILGPESPVAQVVKGEVAKEWNSPARYPADIKREKRKVKSRPYWIQLVCCTSVGPQRR* 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1280 1097 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 1092 - -
Gso5g1280 1097 MobiDBLite consensus disorder prediction 63 81 - -
Gso5g1280 1097 MobiDBLite consensus disorder prediction 718 758 - -
Gso5g1280 1097 MobiDBLite consensus disorder prediction 896 917 - -
Gso5g1280 1097 MobiDBLite consensus disorder prediction 930 961 - -
Gso5g1280 1097 MobiDBLite consensus disorder prediction 425 451 - -
Gso5g1280 1097 MobiDBLite consensus disorder prediction 1 97 - -
Gso5g1280 1097 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 1092 - -
Gso5g1280 1097 MobiDBLite consensus disorder prediction 737 754 - -
Gso5g1280 1097 MobiDBLite consensus disorder prediction 938 961 - -
Gso5g1280 1097 MobiDBLite consensus disorder prediction 994 1044 - -
Gso5g1280 1097 ProSitePatterns Zinc finger C2H2 type domain signature. 22 42 IPR013087 -
Gso5g1280 1097 MobiDBLite consensus disorder prediction 1009 1024 - -
Gso5g1280 1097 MobiDBLite consensus disorder prediction 1 21 - -
Gso5g1280 1097 MobiDBLite consensus disorder prediction 1025 1044 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1280 Gso-Chr5 36326223 36331811 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso5g1280 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1280 - - gmx:102665569 2138.23