Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1268 ATGGGGAAGAAGAAGCTGGAGATAAAGCGAATCGAGAACAAAAGCAATCGGCAGATAACATTCTCCAAGAGGCGCAAAGGATTGATGAAGAAAGCCCGCGAGTTATCCATTCTCTGCGATGCGAAGTTGGCGCTGCTCATCTTCTCCAGCACCGGCAAGCTCTACGAGCTTTGCAACGGTGACAGTTTGGCCGAGGTCGTGCAGCGATATTGGGATAACTTAGGAGCGAGCGGTACTGACACAAAGGGACTCCGCTTTGAAATTGCAGATATCTGGTCTGATGAAGCGTTTTCTCAATTGGTCCAAAGCCACTTTGGTGTTTCTGAACTTGAGCATCTGAGTGTGACTGACCTTATGGAACTAGAGAAACTGGTTCATTCTGCTCTTTCGCGAATCAGATCAGCAAAGATGCGATTGATGATGGAATCTGTAGAGAATCTTAAGAAAAAGATTGAGGCACAGAAAAAAGCTGATGACGTCAATAACGTGGTGACACGGTTTATTGACTATGATCAAACAGATCGGGTGACGCATAATCTGCTCCCTGGTTTGTAA 555 0.4595 MGKKKLEIKRIENKSNRQITFSKRRKGLMKKARELSILCDAKLALLIFSSTGKLYELCNGDSLAEVVQRYWDNLGASGTDTKGLRFEIADIWSDEAFSQLVQSHFGVSELEHLSVTDLMELEKLVHSALSRIRSAKMRLMMESVENLKKKIEAQKKADDVNNVVTRFIDYDQTDRVTHNLLPGL* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1268 184 PANTHER BNAC02G43470D PROTEIN 1 154 - -
Gso5g1268 184 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Gso5g1268 184 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso5g1268 184 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso5g1268 184 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso5g1268 184 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso5g1268 184 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Gso5g1268 184 Gene3D - 13 77 IPR036879 GO:0003677|GO:0046983
Gso5g1268 184 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Gso5g1268 184 ProSiteProfiles K-box domain profile. 81 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso5g1268 184 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso5g1268 184 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 154 - -
Gso5g1268 184 Coils Coil 137 157 - -
Gso5g1268 184 Pfam K-box region 99 156 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1268 Gso-Chr5 36197819 36215185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1268 1 152 MADS-box Gene Family AT5G10140 47.436 1.29e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso5g1268 K-box 6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1268 - K09264 gmx:100804540 350.517