Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1262 ATGACACCTGGTTACGAATACGATATTAATGATCTGCATCAAGAGGCTCAAGCAAGATGGTTGAAGCCTGCAGAAGTGATGTACATTTTACAGAATCATGAAAAGTTCCAGTTCACCCAAGAGCCCCCACAACAGCCAACCAGTGGATCTCTGTTTCTGTTTAACAAAAGAGTCCTGCGTTTCTTCCGTAAAGATGGTCATAACTGGCGTAAGAAAAGAGATGGAAGAACTGTGGGAGAAGCACACGAAAGGCTGAAGGTTGGAAATGTTGAAGCCTTAAATTGTTACTATGCACACGGAGAGCAGAACCCTACTTTCCAGAGGCGGAGCTATTGGATGTTGGATCCGGCATATGATCATATTGTTCTTGTGCATTATAGGAACACAAGTGAGGGAAAGCTCAGTTCTGGAGCTGGGGCACAATTGTCACCAAGTTCCTCTTCTGTGTATACTCAGAGTCCTAGCCCATATTCTACTCAGAATCCAGGGTCAACATCCATACTTGGCGATTCATATGAACCTAATCAGAGTTTCTCCAGTCCAGGGTCTACAGAAGTTACGTCTGATATGTTCGTACTGAACAATAAAATGGGTCACATGGATGGGACAGATACAGAATCAGGAACCTCGCCTGAACTCGAGGTTACTCAAGCTTTGCGCCGATTGGAGGTGCAGTTAAGTTTGAATGAGGACAACTTTGAAGATATTGTTTCCTTCGGAAGTAAGCACGAAACTACACATGATTCAAACCCTCAGCACGACCAAAGGGTGATCAGCAATCAAGAGCAATCTGCTGCTTTCTCTGGACCTGATGATCAAGGGCTATTTTATGATGGATATAATGGAAGGCAAGGTGATGGTGGTGAATTTTATCATGAATTAATAGACCATGGTTACCCTGATGGAAATGAAAAGGCTTTATGGACAGAGGTGCTGGAATCATGTAAGTCCTCATCTGCAGTCAAGTTACCACAGAAAAATGTATACATGCCAGTTGAAAATCTGGAAAATTCAGTATCTTCTGCAAGAAGGGTACCAGTTTCCAACCAGGAAAACAGTCACTGGCTCAACTTCAACACTGTTTTCTCACAACCTCAAGGTGTTGATGAAGTCAAATTTCCTGTCTATTCTTCTATGGTGGAAACACAAGTAATTAATTCTGACTACTATGAAACATTGTTTGACCAAAGCCAAATTGGAGCACCTCCAGATGCAAATTCAAGCTTGACTGTTGCACAAAAACAGAAATTTACAATTAAGACAATCTCCCCAGAATGGGGTTATGCCACTGAGACTACCAAGGTCATTGTTGTTGGGTCTCTTCTCTGTCATCCCTCGGATTCTGCATGGGCTTGTATGTTTGGTGATGTTGAAGTTCCTGTTGAGATAATTCAGGATGGTGTAATCTCTTGTGAAGCTCCATCTCACCTTCCTGGAAAGGTTACTCTGTGCATTACTTCTGGAAACCGGGAGTCCTGCAGTGAGGTCAGAGAGTTTGAATATCGTGATAAGACCAATAGTTGCACTCAATGTACTCAATCAGAAACAGAAGCCACTAGAAGTCCAGAAGAGCTGTTATTACTTGTTAGATTAGAGCAAATGCTTCTTTCTGCATCAACAATAAAGAATGACAACATAGAATCTGGAATTCCTCTCATAAAACAGAAAGCTGATGATGACTCGTGGAGCCATATTATAGAGGCTCTTCTAGTTGGCAGTGGAACGTCGACTGGTACTGTTGATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGCTTCAACAGTGGCTTTCTTGCAGATCTCAGGAAAAAGATGAAGAGACAGGCTGCTCTTTGTCCAAGAAAGAGCAAGGGATTATTCACATGGTTGCTGGGTTAGGTTTTGAGTGGGCCTTGAACCCTATTCTCACTTGTGGAGTCAATATAAATTTCCGTGACATCAATGGGTGGACTGCCCTTCATTGGGCTGCACGTTTTGGAAGGGAAAAAATGGTTGCTTCACTTATAGCTTCTGGAGCATCTGCTGGAGCTGTGACAGATCCAAATGCACAAGATCCAACCGGTAAAACTGCTGCATCTATTGCAGCCGGCAATGGGCACAAGGGACTGGCAGGGTATCTTTCAGAGATAGCTGTAACAAGCCATCTGTCATCTCTTACACTGGAAGAGAGTGAATTATCTAAAAGTTCTGCTGAGCTTCAGGCAGATATGACTGTTAACAGTGTCTCCAAGGAAAATCTTACTGCCAGTGAGGATCAGGCATCACTCAAAGATACCTTGGCTGCTATCAGAAATGTAACTCAGGCAGCTGCGCGGATACAATCTGCTTTTCGTTCACATTCTTTTAGAAAACGAAGAGCAAGAGAAGTAGCTGCTAGTGCAGGTGGCATTGGTACCATTTCAGAGATTTCTGCTATGTCAAAACTTGCCTTTCGGAACTCACGTGAATATAATTCAGCTGCTTCAGCTGCTTTATCGATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGATTTCTTAGCGTTGCGCAAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGCTACCAGGTTAGGAAGCATTACAAGGTAATATGGGCAGTTGGAATCTTGGACAAGGTTGTCTTACGATGGAGGAGAAAAGGAGCTGGTTTACGAGGTTTCCGACAAGAGATGGACATCAACGAAAATGAAAATGAAGATGAAGATATTCTCAAGGTGTTCCGAAAACAGAAAGTTGATGTAGAAATTGAAGAGGCTGTTTCAAGGGTGCTGTCCATGGTCGACTCACCAGATGCTCGTGAGCAATATCATCGCATGCTTGAGAAATATCGTCAAGCTAAGGCTGAACTTGCGGGTACGAGTGACGAGGCATCATTATCAACTTCTGTAGGAGATGACTTATTTATTGATGATTTTTATCCATTTCCCTAG 2934 0.4291 MTPGYEYDINDLHQEAQARWLKPAEVMYILQNHEKFQFTQEPPQQPTSGSLFLFNKRVLRFFRKDGHNWRKKRDGRTVGEAHERLKVGNVEALNCYYAHGEQNPTFQRRSYWMLDPAYDHIVLVHYRNTSEGKLSSGAGAQLSPSSSSVYTQSPSPYSTQNPGSTSILGDSYEPNQSFSSPGSTEVTSDMFVLNNKMGHMDGTDTESGTSPELEVTQALRRLEVQLSLNEDNFEDIVSFGSKHETTHDSNPQHDQRVISNQEQSAAFSGPDDQGLFYDGYNGRQGDGGEFYHELIDHGYPDGNEKALWTEVLESCKSSSAVKLPQKNVYMPVENLENSVSSARRVPVSNQENSHWLNFNTVFSQPQGVDEVKFPVYSSMVETQVINSDYYETLFDQSQIGAPPDANSSLTVAQKQKFTIKTISPEWGYATETTKVIVVGSLLCHPSDSAWACMFGDVEVPVEIIQDGVISCEAPSHLPGKVTLCITSGNRESCSEVREFEYRDKTNSCTQCTQSETEATRSPEELLLLVRLEQMLLSASTIKNDNIESGIPLIKQKADDDSWSHIIEALLVGSGTSTGTVDWLLEELLKDKLQQWLSCRSQEKDEETGCSLSKKEQGIIHMVAGLGFEWALNPILTCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGAVTDPNAQDPTGKTAASIAAGNGHKGLAGYLSEIAVTSHLSSLTLEESELSKSSAELQADMTVNSVSKENLTASEDQASLKDTLAAIRNVTQAAARIQSAFRSHSFRKRRAREVAASAGGIGTISEISAMSKLAFRNSREYNSAASAALSIQKKYRGWKGRKDFLALRKKVVKIQAHVRGYQVRKHYKVIWAVGILDKVVLRWRRKGAGLRGFRQEMDINENENEDEDILKVFRKQKVDVEIEEAVSRVLSMVDSPDAREQYHRMLEKYRQAKAELAGTSDEASLSTSVGDDLFIDDFYPFP* 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1262 977 ProSiteProfiles Ankyrin repeat profile. 647 679 IPR002110 GO:0005515
Gso5g1262 977 SMART ANK_2a 686 715 IPR002110 GO:0005515
Gso5g1262 977 SMART ANK_2a 647 676 IPR002110 GO:0005515
Gso5g1262 977 ProSiteProfiles Ankyrin repeat region circular profile. 647 673 - -
Gso5g1262 977 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 5 963 - -
Gso5g1262 977 CDD IPT 418 503 - -
Gso5g1262 977 Pfam Ankyrin repeats (3 copies) 629 707 IPR002110 GO:0005515
Gso5g1262 977 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Gso5g1262 977 Gene3D - 819 867 - -
Gso5g1262 977 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 5 963 - -
Gso5g1262 977 SMART CG_1_2 12 130 IPR005559 GO:0003677
Gso5g1262 977 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Gso5g1262 977 Gene3D - 525 712 IPR036770 -
Gso5g1262 977 MobiDBLite consensus disorder prediction 252 268 - -
Gso5g1262 977 Pfam IQ calmodulin-binding motif 843 863 IPR000048 GO:0005515
Gso5g1262 977 Pfam IQ calmodulin-binding motif 821 839 IPR000048 GO:0005515
Gso5g1262 977 ProSiteProfiles IQ motif profile. 842 867 IPR000048 GO:0005515
Gso5g1262 977 SUPERFAMILY Ankyrin repeat 616 708 IPR036770 -
Gso5g1262 977 MobiDBLite consensus disorder prediction 133 186 - -
Gso5g1262 977 ProSiteProfiles IQ motif profile. 819 848 IPR000048 GO:0005515
Gso5g1262 977 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 815 865 IPR027417 -
Gso5g1262 977 SUPERFAMILY E set domains 418 502 IPR014756 -
Gso5g1262 977 MobiDBLite consensus disorder prediction 242 273 - -
Gso5g1262 977 Pfam IPT/TIG domain 418 501 IPR002909 -
Gso5g1262 977 Gene3D Immunoglobulins 412 507 IPR013783 -
Gso5g1262 977 Coils Coil 937 957 - -
Gso5g1262 977 ProSiteProfiles IQ motif profile. 766 794 IPR000048 GO:0005515
Gso5g1262 977 SMART iq_5 841 863 IPR000048 GO:0005515
Gso5g1262 977 SMART iq_5 818 840 IPR000048 GO:0005515
Gso5g1262 977 SMART iq_5 764 786 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1262 Gso-Chr5 36168958 36179297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1262 5 967 CAMTA Transcription Factor Family AT1G67310 53.261 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gso5g1262 CG-1 1.6e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1262 K21596 - gmx:100786880 1873.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1262 5 36168958 36179297 Gso8g0876 8 8141737 8149853 GST
Gso18g0045 18 402618 411215 Gso5g1262 5 36168958 36179297 PCT
Gso5g1262 5 36168958 36179297 Gso18g0045 18 402618 411215 PCT