Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1260 ATGAGTTTGCTCCATGTAGTTGGGTTTGCTCTAAAAGTGGGGCATCTACTTTTGGTGCTATGTTGCTGGGTTGTGTCTGTCGTTTACCTTAACTGGTTTATTAGCAGTGGAATTATGGAAACCAAGATGATGGGTGGTGGTGGTGGTGGTGGTGGCAAGATGTGGCACAAAAAATGGTGGGAGAATATATCAGGGCAGGGTTGCAAAATCCACCAACAGTACTACCAGTATATTGGCTCTAAGAAAGTTAAGAGAGCGTTGTGGAGGAAGATTTTGCTGACATGGGTCGTGGGTTGGTTCATAGTATCTTTGTGGATCTTCAGCTACATGAGCTTGCAAGGTACTGAGAAGAGGAAAGAAACTCTCGCAAGCATGTGTGATGAAAGGGCTAGGATGCTGCAGGATCAGTTTAACGTCAGTATGAACCATATCCAAGCCATGTCCATTCTGATCTCCACCTTTCACCATGCTAAGAGCCCCTCAGCCATCGATCAGAAAACTTTTGCAAAGTACACAGAAAGAACAGCTTTTGAGAGGCCTCTTACAAGTGGTGTTGCGTATGCTGTAAGGGTGCTCCATTCTGAAAGGGAACAATTTGAAAAGCAGCAAGGTTGGACTATCAAGAGGATGGATACTCTAGAGCAGAACCCGGTTCATAAGGATGATTATGCCCCAGAGGCATTGGAGCCATCCCCCGTTCAGGAAGAATATGCTCCTGTCATCTTTGCACAGGATACAATTGCACATGTGATTTCTGTTAATGTGCTTTCTGGAAAGGAAGACCGTGAAAATGTGCTGCGTGCAAGAGAATCAGGCAAAGGCGTTTTAACTGCGCCCTTCAGGCTGCTCAAAACAAATAGGCTAGGGGTTATCCTGACATTTGCTGTCTACAAGAGAGATCTTCCATCAAATGCAACCCCAAATGAAAGGATTCAAGCAACTGACGGGTATCTTGGGGGAGTCTTTGATGTTGAGTCATTAGTGGAGAAATTACTTCAGCAACTTGCTAGCAAGCAAAGTGTAATTGTTAATGTGTATGATACTACAAATCACACTCATCCAATTGCCATGTATGGCTCAAATGAATCAGGGGATGTTTTCTTTCACGTCAGCACTCTTAACTTTGGAGACCCTTTTAGGAAGCATGAGATGCACTGCAGGTTCAAGCAGAAGCCACCATGGCCATGGGTGGCAATAACTACTTCAATTGGTATCCTTGTTATTGCACTCCTTGTTGGACATATTTTCCATGCCACTGTGAATCGAATTGCCGAAGTAGAAGATGATTATCGTAAGGAGATGGAACTTAAAAAACAAGCTGAGGCGGCTGATGTTGCAAAATCCCAGTTTCTTGCTACTGTTTCCCATGAAATCAGAACACCAATGAACGGTGTTTTAGGGATGTTGCATATGCTTATGGACACAGATCTAGATGTCACCCAACAGGAATATGTCAGGACAGCACAGGAAAGTGGAAAAGCTCTGGTGTCACTTATAAACGAGGTTTTGGATCAGGCTAAGATTGAATTTGGTAAGCTAGAGCTTGAGGCTGTGCTCTTCGACATACGGGCAATTTTGGATGATGTATTGTCACTATTTTCTGAGAAGTCTCAAGGAAAAGGAGTAGAGTTGGCAGTTTATGTGTCAGATCATGTTCCAGAACTACTAATAGGTGATCCTGGAAGATTTCGACAAATAATTACCAATCTCATGGGTAACTCAATTAAGTTCACGGACAAAGGACATATTTTTGTCACAATCCATCTTGTTGAGGAGGTTGTCCGTTCAATAGAGGTTGACAAAGAATCCAACTCAGAAAATACCTTGAGTGGTTCCCCTGTTGCTGATAGTCGCCGGAGCTGGGAAGGATTCAAGGCTTTCAGTCAAGAGGGACCTCTTGGTTCCTTCTCATCCCCCTCCAGTGATCTTGTCAATTTGATTGTATCTGTTGAGGATACAGGTGAAGGTATTCCTCTTGAATCTCAGCCACTCATCTACACCCCATTCATGCAGGTAGGTCCATCCATCTCCCGAAAGCATGGAGGAACAGGAATTGGCCTAAGCATTAGTAAGTGTTTGGTTGGCCTCATGAATGGGGAAATTGGATTTGTGAGTATACCCAAGACTGGATCCACATTCACTTTTACAGCTGTATTCACCAATGGACACTGCAGTTCAAATGAGTGTAAAGTTCAGCAAATCAACAACCAACCTCAGTCTGCATCTTCAGAATTCGAAGGGATGACTGCATTAATTATTGACCCAAGATCTGTTAGAGCAAAAGTGTCTAGATATCACATCCAACGGCTTGGCATTCATGTTGAGATGGTTTCAGATTTAAAACAAGGTTTGTCAACCATAAGCAATGGGAATATAATTATTAATATGGTTTTGATTGAGCAGGAGGTTTGGGATAGAGATTTAGGCTTGTCATCTCATTTTGTCAATAACACAAGGAGAATTGATCAGGGGGTTCCTCCAAAGCTGTTCATTCTTGTTAATTCTAGTAGTTCTTTTAAAGCTAGTGTAAACTTGGGTGTTCATAATCCTATTGTCATCACCAAACCTCTGAGAGCGAGTATGCTTGCTGCCTCACTACAACGAGCCATGGGTGTCCAAAATAAGGGAGCTCCTCATAGAGAGCTCCAAAGTTTGTCTCTTCGCCATCTTCTTCGTGGCAGGAAAATTCTAATTGTAGATGACAATAGTGTGAACCGTGCAGTAGCAGCTGGTGCATTGAAAAAGTATGGAGCAGATGTGGTTTGTGTTAGTAGTGGTAAAGATGCCATCTCTTCCTTGAAGCCACCCCATCAGTTTGATGCCTGTTTCATGGATATTCAAATGCCAGAAATGGATGGATTTGAAGCTACAAAGCGAGTTAGGGAGATGGAAGATAGTGTGAACAGAGAAGTATCTATGGATGACTTTGAGAATATTACAAACTGGCATGTACCCATTTTAGCCATGACTGCAGATGTGATACATGCTACACACGAGGAATGCCTAAAGTGGGGCATGGATGGATATGTTTCAAAACCCTTTGAAGCTGAACAGCTGTATAGAGAAGTCTCACGGTTTTTCCAGTCATCTTGA 3093 0.429 MSLLHVVGFALKVGHLLLVLCCWVVSVVYLNWFISSGIMETKMMGGGGGGGGKMWHKKWWENISGQGCKIHQQYYQYIGSKKVKRALWRKILLTWVVGWFIVSLWIFSYMSLQGTEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQKTFAKYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKDDYAPEALEPSPVQEEYAPVIFAQDTIAHVISVNVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDVESLVEKLLQQLASKQSVIVNVYDTTNHTHPIAMYGSNESGDVFFHVSTLNFGDPFRKHEMHCRFKQKPPWPWVAITTSIGILVIALLVGHIFHATVNRIAEVEDDYRKEMELKKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRAILDDVLSLFSEKSQGKGVELAVYVSDHVPELLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVVRSIEVDKESNSENTLSGSPVADSRRSWEGFKAFSQEGPLGSFSSPSSDLVNLIVSVEDTGEGIPLESQPLIYTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSIPKTGSTFTFTAVFTNGHCSSNECKVQQINNQPQSASSEFEGMTALIIDPRSVRAKVSRYHIQRLGIHVEMVSDLKQGLSTISNGNIIINMVLIEQEVWDRDLGLSSHFVNNTRRIDQGVPPKLFILVNSSSSFKASVNLGVHNPIVITKPLRASMLAASLQRAMGVQNKGAPHRELQSLSLRHLLRGRKILIVDDNSVNRAVAAGALKKYGADVVCVSSGKDAISSLKPPHQFDACFMDIQMPEMDGFEATKRVREMEDSVNREVSMDDFENITNWHVPILAMTADVIHATHEECLKWGMDGYVSKPFEAEQLYREVSRFFQSS* 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1260 1030 Coils Coil 423 443 - -
Gso5g1260 1030 Gene3D - 889 1030 - -
Gso5g1260 1030 ProSiteProfiles Response regulatory domain profile. 895 1027 IPR001789 GO:0000160
Gso5g1260 1030 SMART HKATPase_4 558 721 IPR003594 -
Gso5g1260 1030 Gene3D - 510 722 IPR036890 -
Gso5g1260 1030 SUPERFAMILY CheY-like 891 1027 IPR011006 -
Gso5g1260 1030 Pfam Response regulator receiver domain 896 1022 IPR001789 GO:0000160
Gso5g1260 1030 SUPERFAMILY CheY-like 745 871 IPR011006 -
Gso5g1260 1030 Gene3D - 110 162 - -
Gso5g1260 1030 CDD REC_hyHK_CKI1_RcsC-like 896 1023 - -
Gso5g1260 1030 ProSiteProfiles CHASE domain profile. 159 385 IPR006189 -
Gso5g1260 1030 Pfam CHASE domain 162 358 IPR006189 -
Gso5g1260 1030 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 500 716 IPR036890 -
Gso5g1260 1030 CDD PRTases_typeI 844 923 IPR000836 -
Gso5g1260 1030 PANTHER TWO-COMPONENT HISTIDINE KINASE 58 1029 - -
Gso5g1260 1030 SMART CHASE_2 159 360 IPR006189 -
Gso5g1260 1030 Pfam His Kinase A (phospho-acceptor) domain 446 509 IPR003661 GO:0000155|GO:0007165
Gso5g1260 1030 CDD HATPase_EvgS-ArcB-TorS-like 563 719 - -
Gso5g1260 1030 ProSiteProfiles Response regulatory domain profile. 749 870 IPR001789 GO:0000160
Gso5g1260 1030 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 558 719 IPR003594 -
Gso5g1260 1030 ProSiteProfiles Histidine kinase domain profile. 453 721 IPR005467 -
Gso5g1260 1030 SMART HisKA_10 446 511 IPR003661 GO:0000155|GO:0007165
Gso5g1260 1030 Gene3D CHASE domain 163 392 IPR042240 -
Gso5g1260 1030 CDD HisKA 446 507 IPR003661 GO:0000155|GO:0007165
Gso5g1260 1030 SMART REC_2 894 1023 IPR001789 GO:0000160
Gso5g1260 1030 PANTHER HISTIDINE KINASE 3 58 1029 - -
Gso5g1260 1030 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 435 512 IPR036097 GO:0000155|GO:0007165
Gso5g1260 1030 PRINTS Bacterial sensor protein C-terminal signature 646 660 IPR004358 GO:0016310|GO:0016772
Gso5g1260 1030 PRINTS Bacterial sensor protein C-terminal signature 664 674 IPR004358 GO:0016310|GO:0016772
Gso5g1260 1030 PRINTS Bacterial sensor protein C-terminal signature 681 699 IPR004358 GO:0016310|GO:0016772
Gso5g1260 1030 PRINTS Bacterial sensor protein C-terminal signature 705 718 IPR004358 GO:0016310|GO:0016772
Gso5g1260 1030 Gene3D - 414 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1260 Gso-Chr5 36153703 36161612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1260 1 1029 Miscellaneous Gene Families AT1G27320 68.416 0.0 1412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso5g1260 CHASE 7.6e-36 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1260 K14489 - gmx:100801546 2027.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1260 5 36153703 36161612 Gso8g0874 8 8126739 8134603 GST