Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1242 ATGATGGATGTTGCTGAGGTTGAGGAAAATCTGTTTGCTGCAAGTGATGCCAAGTTACATGGACAGATGTGCAAGACTCTTTCTATAATATATTGCAAAGTATTGTCTGTATTTCCTTCTTTAGAAGCTGCTAGGCCTAGGAGTAAAACTGGTATTCAGGCATTATGTTCATTGCATGTAGCCTTGGAGAAAGTAAAGAATGTTCTTCAGCACTGCTCGGAGTGTAGTAAACTTTACTTGGCTATAACTGGAGATTCTGTCCTCCTAAAATTTGAGAAGGCTAAATGTGCTCTTGAAGATAGTCTTAGACGGGTGGAAGATATTGTTCCACAATCTATTGGGTGTCAGGTTCAGGAGATTGTGAATGAATTTGCAACAATAGAATTTGCACTTGACCCATCAGAGAAGCAAGTTGGTGATGATTTAATTGCATTGCTCCAACAGGGAAGAAAGTTTAATGACTCTAATGACAGCAATGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGAATTACATCTTCAAGAGCAGCTCTTGCTGAAAGAAGAGCTCTCAAGAAACTCATAGAAAGGGCTCAATCTGAGGAAGACAAGCGGAAGGAATTAATTATTGCATATCTTTTACATCTTATGAGGAAATACTCCAAGTTATTTAGAAACGAGTTCTCAGATGACAATGATTCTCAGGGTTCTGCACCTTGTTCTCCCGTTCAAGGATCTATCGAGGATAGTGTTCCTGGTAGTCATTGTCAAGCCTTTGACAGACAACTTTCAAAATTCAGTTGCTTTAATTTCAAACCAAATATTAGTAGGACATCTGGGCAGATGCCTCTTCCACCTGAAGAGTTAAGGTGTCCAATATCTCTGCAACTCATGTATGATCCTGTTATCATTGCTTCTGGGCAGACTTATGAAAGGGTTTGTATAGAGAAATGGTTCAGTGATGGGCACAACAACTGCCCAAAGACCCAGCAGAAACTTTCACATCTTTGTTTGACTCCTAATTATTGTGTTAAGGGCCTTGTTTCTAGTTGGTGTGAACAAAATGGAGTTCCTATTCCTGAAGGCCCTCCTGAATCTCTTGATCTTAACTACTGGGGATTGGTATTATCAGAGTCTGAATCTACAAATTCAAAATCTGTAAATAGTGTCAGCTCTTGCAAGTTGAAGGGTGTCCATGTGGTTCCTTTGGAAGAGAGTGGTATCTCAGAGGAATCTGTGGAAAATGGAACTGAAAGTGTTTCTGCACAAGAGGAAGACACTGAGCAGTATTTTAGCTTTCTGAAAGTCTTGACTGAGGTGAACAATTGGAGGAAGCAATGTGAAGTAGTAGAACAGTTAAGGCTGCTGCTGAGGGATGACGAGGAAGCCAGGATTTTTATGGGGGCAAATGGGTTTGTTGAAGCACTTTTGCAGTTTTTGCAATCAGCTGTGCGTGAAGGTAGTTTGATGGCTCTGGAAAGTGGAGCAATGGCTCTCTTCAACCTGGCTGTGAATAATAACAGAAATAAGGAAATTATGTTATCGGCTGGAGTATTATCATTGTTGGAGGAAATGATTCCTAAAACTAGTTCTTATGGTTGTACAACTGCTCTTTATTTGAGTCTCTCTTGCCTTGAAGAAGCCAAGCCTATGATTGGCATGAGTCAGGCTGTCCAGTTCCTAATCCAGCTTCTTCAATCGGACTCTGATGTTCAATGCAAGCAAGATTCTCTCCATGCTCTCTATAATCTTTCTACTGTGCCCTCAAATATTCCATACCTCCTTTCATCTGGCGTCATTAGTGGCTTACAATCCCTTCTTGTAGGCGAGGGGGATTGCATTTGGACAGAAAAATGCGTAGCTGTTTTGATAAATTTAGCTACTTCTCAAGTTGGAAGGGAGGAAATTGTATCTACTCCTGGACTCATTGGTGCATTGGCTTCGATATTGGACACCGGTGAGCTCATAGAACAGGAGCAAGCTGTCTCTTGTCTCCTAATTTTGTGCAATAGAAGTGAGGAATGCAGTGAGATGGTCCTGCAGGAAGGGGTTATACCAGCATTGGTTTCAATATCAGTGAATGGAACTCCAAGAGGTCAAGAAAAAGCTCAGAAACTCTTGATGTTGTTCCGAGAGCAGCGACGAGACCCTTCACCAGTTAAGACACATCAGTGCTCACCTGAAGCTAGTGATTTGTCTATGCCGCCTGCTGAAATGAAACCGCTATGCAAGTCCATTTCAAGAAGAAAGTCTGGGAGAGCTTTTAGCTTTTTCTGGAAAAACAAGAGCTATTCTGTATACCAGTGTTAA 2295 0.4139 MMDVAEVEENLFAASDAKLHGQMCKTLSIIYCKVLSVFPSLEAARPRSKTGIQALCSLHVALEKVKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFATIEFALDPSEKQVGDDLIALLQQGRKFNDSNDSNELESFHQAATRLGITSSRAALAERRALKKLIERAQSEEDKRKELIIAYLLHLMRKYSKLFRNEFSDDNDSQGSAPCSPVQGSIEDSVPGSHCQAFDRQLSKFSCFNFKPNISRTSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQKLSHLCLTPNYCVKGLVSSWCEQNGVPIPEGPPESLDLNYWGLVLSESESTNSKSVNSVSSCKLKGVHVVPLEESGISEESVENGTESVSAQEEDTEQYFSFLKVLTEVNNWRKQCEVVEQLRLLLRDDEEARIFMGANGFVEALLQFLQSAVREGSLMALESGAMALFNLAVNNNRNKEIMLSAGVLSLLEEMIPKTSSYGCTTALYLSLSCLEEAKPMIGMSQAVQFLIQLLQSDSDVQCKQDSLHALYNLSTVPSNIPYLLSSGVISGLQSLLVGEGDCIWTEKCVAVLINLATSQVGREEIVSTPGLIGALASILDTGELIEQEQAVSCLLILCNRSEECSEMVLQEGVIPALVSISVNGTPRGQEKAQKLLMLFREQRRDPSPVKTHQCSPEASDLSMPPAEMKPLCKSISRRKSGRAFSFFWKNKSYSVYQC* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1242 764 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Gso5g1242 764 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 353 IPR013083 -
Gso5g1242 764 Gene3D - 400 713 IPR011989 -
Gso5g1242 764 SMART arm_5 455 499 IPR000225 GO:0005515
Gso5g1242 764 SMART arm_5 540 581 IPR000225 GO:0005515
Gso5g1242 764 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Gso5g1242 764 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 756 - -
Gso5g1242 764 SUPERFAMILY ARM repeat 429 706 IPR016024 -
Gso5g1242 764 MobiDBLite consensus disorder prediction 710 729 - -
Gso5g1242 764 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Gso5g1242 764 CDD RING-Ubox_PUB 284 326 IPR045210 -
Gso5g1242 764 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Gso5g1242 764 Coils Coil 176 206 - -
Gso5g1242 764 SUPERFAMILY RING/U-box 277 355 - -
Gso5g1242 764 PANTHER U BOX DOMAIN-CONTAINING 2 756 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1242 Gso-Chr5 35929633 35934594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1242 2 763 U-box Gene Family AT1G24330 66.581 0.0 1027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1242 - - gmx:100794099 1466.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1242 5 35929633 35934594 Gso8g0858 8 7954481 7959513 GST
Gso18g0071 18 609706 615010 Gso5g1242 5 35929633 35934594 PCT
Gso13g1550 13 30881961 30887325 Gso5g1242 5 35929633 35934594 PCT
Gso5g1242 5 35929633 35934594 Gso18g0071 18 609706 615010 PCT
Gso5g1242 5 35929633 35934594 Gso13g1550 13 30881961 30887325 PCT