Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1236 ATGGCGGCTGGCAGACATGGCGGTTACCGCGAAAACGAGTTCAGAGAGCGCGAGTCAAAGTTGGAAGTTTCCAGACGCGGCGGATTTGCGAATTCGAAAGAGGATTACGATCGTGTTAGCAATGGTGGCGGTGATGTTGTGAGGGGTGGATCAAGGGATAGGGTTAGGGTGAGGCAGAAGGATATTAAGGAGAGGGAAGATGTTAATGGTGGTGGTTATCGATCCTCTTCGAGTAGGAGTGACTCTGGCAGCAGTGGCCTTGGTCCTCGCCAATGTGGTTTCTCTGTCAAGTCAGTTGATAGAGAGCCTGGTGAGCTTTCCAGTGAGAGTGGTTCTGATGATGCTACTGAATCAGAACCGGGTGCGAAAGACACCGAGGTTGCCATGTTGGAAGAAACCAGGACTCAGTCTCCGCCTGCGCCGGAGAGGAAAAGGAAGTTTTCACCCATAGTATGGGATCAGGATGACAAGGAAGTCAACGAGTCATCCAGAGTCAGGGGTTCCACTTCTGCGGTGAAGGGGGCGCTTCCTCCTCCACCTCCGTTGCCAAAGGTTTTCTGTCAGTTGCAGTCGCCGAATGTTCCAAATGGTGGAGTTGAAATACATCTTGTCAAGAACAGGGAAACTGAGGAACTTCAGTTGAATGCAGCATCTAAGGTTACCTTGCCCTCTCCTTCAGGTTTGCATTCATTGCCCCCGAAAGGGAGGTGGGATAATGATCAGGAAGCTGAACATCCAGAAGGTGAAGATTATATTCCAACTCGCAATATATCGTCTTCAAGATGGGCAGCTGGAGATAACTCTCCTGTTGATGAGGGTGAGATCCTCAATGATGAGGAAATGCCCAAACGAAGGAGGAGGGTGTCTCCTGAGTTATTGGATGGTAGACTAAGGAACAAGCTATTAAGCCCTGAGGAATCTAAGGTAGAAGGTATTGAAAGAGCTAGGGCCAGATCATCTGAATCTGAAGAAAGAGGTGTCCGTGGGAGAACTTCCAGTGGTGATGATTTTCCTGGTATTGAGTCAGAGAAGGATGACTACATGGAGATTGATGCTCAAGGTGGGGAAAGTGAAACCAGTGTCAGTCACTCAGACACGGATTCTGAAGATGAAGATGATGGCCAGGAGACTCCAGAACCTCCTGCTCAACCTCAAAGAGCTGTCAACATGCTTCAGGGTTGTAGAAGTGTTGATGAGTTTGAGAGACTTAACAAGATAGATGAAGGAACATACGGTGTTGTATATAGGGCTAGGGATAAAAAGACTGGAGAAATTGTAGCATTAAAGAAGGTCAAGATGGAGAAGGAAAAAGAAGGCTTCCCACTGACTTCTCTTAGGGAAATAAACATTCTTCTTTCTTTTCACCACCCATCCATAGTTGATGTTAAAGAAGTAGTGGTAGGAAGTAGCCTTGATAGTATTTTCATGGTCATGGAATATATGGAACATGACCTTAAAGGACTAATGGAGGCAATGAAGCAACCTTTTAGCCAGAGTGAAGTGAAGTGCTTGATGATCCAGCTTTTAGAAGGTGTGAAGTATCTTCATGACAACTGGGTGCTTCATAGGGATTTAAAGACTTCAAACCTGCTTCTAAATAATAGGGGTGATCTAAAAATTTGTGATTTTGGCTTGGCTCGTCAGTATGGGAGTCCTTTAAAGCCATATACGCATCTGGTGGTTACTCTTTGGTACAGGGCACCTGAACTTCTTCTGGGGGCAAAACAGTATTCAACAGCCATTGACATGTGGTCTTTAGGTTGTATAATGGCTGAGCTATTGTCTAAGGAGCCACTATTTAATGGGAAAACAGAGTTTGATCAACTTGACAAGATTTTCCGGATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCCAAATTACCTGGAGTCAAGGTCAATTTTGTCAAACACCAGTACAACCTCCTGCGTAAAAAGTTTCCTGCCACATCATTCACTGGATCTCCTGTTCTTTCTGATTCTGGATTTGATTTGTTGAACAAGCTTCTAACTTATGACCCTGAGAAGCGGATCACTGCCGAAGCTGCTCTAAATCATGAGTGGTTTCGTGAAGTTCCTCTCCCCAAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAGGCGTGTGCGGAGAATATACAAGAGTCCGGATCCTTTAGAGGAGCAGCGCCGGAAGGAGTTGCAGCAGGGTGAAACAGGGACTGGTGGAATTTTTGGCTAA 2241 0.4583 MAAGRHGGYRENEFRERESKLEVSRRGGFANSKEDYDRVSNGGGDVVRGGSRDRVRVRQKDIKEREDVNGGGYRSSSSRSDSGSSGLGPRQCGFSVKSVDREPGELSSESGSDDATESEPGAKDTEVAMLEETRTQSPPAPERKRKFSPIVWDQDDKEVNESSRVRGSTSAVKGALPPPPPLPKVFCQLQSPNVPNGGVEIHLVKNRETEELQLNAASKVTLPSPSGLHSLPPKGRWDNDQEAEHPEGEDYIPTRNISSSRWAAGDNSPVDEGEILNDEEMPKRRRRVSPELLDGRLRNKLLSPEESKVEGIERARARSSESEERGVRGRTSSGDDFPGIESEKDDYMEIDAQGGESETSVSHSDTDSEDEDDGQETPEPPAQPQRAVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKTGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPSIVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCLMIQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGDLKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGAKQYSTAIDMWSLGCIMAELLSKEPLFNGKTEFDQLDKIFRILGTPNETIWPGFSKLPGVKVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEAALNHEWFREVPLPKSKEFMPTFPAQHAQDRRVRRIYKSPDPLEEQRRKELQQGETGTGGIFG* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1236 746 MobiDBLite consensus disorder prediction 1 185 - -
Gso5g1236 746 MobiDBLite consensus disorder prediction 8 41 - -
Gso5g1236 746 PANTHER CELL DIVISION PROTEIN KINASE 169 746 - -
Gso5g1236 746 CDD STKc_CDC2L1 394 691 IPR045267 GO:0004674|GO:0005524|GO:0006468
Gso5g1236 746 MobiDBLite consensus disorder prediction 49 70 - -
Gso5g1236 746 MobiDBLite consensus disorder prediction 216 387 - -
Gso5g1236 746 MobiDBLite consensus disorder prediction 720 735 - -
Gso5g1236 746 MobiDBLite consensus disorder prediction 116 130 - -
Gso5g1236 746 ProSiteProfiles Protein kinase domain profile. 400 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1236 746 MobiDBLite consensus disorder prediction 235 251 - -
Gso5g1236 746 Pfam Protein kinase domain 400 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1236 746 SMART serkin_6 400 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1236 746 Gene3D Transferase(Phosphotransferase) domain 1 483 722 - -
Gso5g1236 746 MobiDBLite consensus disorder prediction 71 91 - -
Gso5g1236 746 ProSitePatterns Serine/Threonine protein kinases active-site signature. 520 532 IPR008271 GO:0004672|GO:0006468
Gso5g1236 746 Gene3D Phosphorylase Kinase; domain 1 384 482 - -
Gso5g1236 746 MobiDBLite consensus disorder prediction 720 746 - -
Gso5g1236 746 PANTHER CYCLIN-DEPENDENT KINASE G-2-LIKE 169 746 - -
Gso5g1236 746 MobiDBLite consensus disorder prediction 276 351 - -
Gso5g1236 746 MobiDBLite consensus disorder prediction 137 163 - -
Gso5g1236 746 SUPERFAMILY Protein kinase-like (PK-like) 392 697 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1236 Gso-Chr5 35884289 35887693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1236 391 736 Core Cell Cycle Gene Families AT5G10270 45.304 8.58e-95 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Gso5g1236 Pkinase 1.5e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1236 K08818 - gmx:100792524 1427.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1236 5 35884289 35887693 Gso8g0854 8 7925157 7928558 GST