Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1229 ATGGTCGTTTTGGATGCTCTGTTGGGAACGGTCAATGTGGCATTCTTGTATGCCATTTTGATATGGCTTTTGGTGGATAGTTTGAGACAAAGCACTCTTAGCCATGTTCGTGTTGTAGATTGTTTCAAACGAGGACCAATGGTTTTCGCTGTATCCACTGTTCTATCCTGTGCTGTTATTTCTGTTATGAACATGGCTCTAGCCTTTTACCAATACAGCTCTAGGAAAATAATTGGATTTAACTCTGTTTCATTGGCTCTAACTTGGGTTTTGGCCACTATAGTTTCGTTTTATTCAATGAGGACTAAAGTGAGGGAGAACAAGAGGTTCGGGTTCCCTCTTGTTCTGATCCTATGGTGGGTTTTTGCTTGTAGCATAGATGCAATCTTACTGTCTTTGAAGCTGGTAAAAGGTTTTGAATCAATCGACTTGTGGTTTTTCTTGTCAGAGGATAACGTAGTAGATTCGGTTTCCTTGCCTTTGTTGGTACTTCTTTGTTTCAATGTGTGTGCAAGGGAAAACAGTGATGTGGAACAAGAACAACAACTCTTACTAGAAAAAGAGGAGGAATCTTCTATGGAGGAGGAAGATGAAGAGGCTTTTACGAATGCAAGCATGTGGAGCAAACTTGCATTTCGATGGTTGAATCCCATTTTTAAAGCCGGTCGGATTAAAAAGCTTGAACTTGGTCATATTCCTCCTGTTCCTCCTTCTGAAACGGCAGAAAATGCTTCTTCCGTGTTGGAAGAATCACTTCGCAAACAGAAACTTGAAGGGGGTTCCTTGACAAAAGCTATTGCCTATTCTCTATGGAAGTCTTTGGCCTTAAACGCAGTTTTAGCTGGTGTTAACACAGGTGCCTCCTATATAGGTCCCTTGTTGATCACAAATTTTGTGAATTTTTTATTGGGGGATGATGGTGATTCAAGCATCCAATATGGATTGCTTCTTGCATTTATTTTCTTCCTTGCAAAGACTGTGGAGTCACTGAGTCAAAGACAATGGTACTTCGGTGCTCAACGAATTGGAATCCGGGTGCGTGCTGCTCTCATATCTCTAATTTATGGGAAGTCCCTATTGATGAAGTGTGCTGGACCAACACAAGGTAGAATCATAAACTTGATCAATGTGGATGTTGAAAGAATTGGGGACTTCTGCTGGTACATTCATGGAGTTTGGTTGCTTCCAGTTCAGATCATTTTGGCCTTGGTAATCTTATACATAAATCTGGGTGGTACTCCTTCTTTTGCTGCATTTGGTGTCACCATATTGGTCATGGTGTGTAACACACCTTTGGCCAATAAGCAAGAAGGTTTGCACTCCAAGATCATGGAAGCTAAGGATTCAAGAATTAAAGTGACATCAGAGACCATGAAGAACATCAGAATTTTAAAATTACATTCATGGGAAACTTCATTCTTGCAGAAACTTCTCCAACTTAGGGAAATTGAGAGGGGATGGCTACAGAAATACCTCTATACATGCTCAGCAGTAGCCACACTATTCTGGACATCTCCAACTTTAGTTTCTGTTGTCACCTTTGGTGCTTGTATACTGGTGAAAACAGAACTAACAACAGCTACAGTCCTCTCAGCTTTAGCGACTTTTCGTATTTTGCAAGAACCAATCTACAACTTGCCAGAGCTTATCTCCATGATCATTCAAACAAAAGTCTCTGTTGATCGAATCCACGAGTTCATCAAGGAAGACGATCAAAACCAATTCATAAACAAGCTTACTTCAAAGATTTCAGAAGTGGCTATTGAAATTAAGCCAGGCGAATATGCATGGGAAACAAATGATCAAACTCACACGAAACCAGCAATTCAAATTACAGGAAAGTTAGTGATAAAGAAAGGTCAGAAGGTAGCAGTTTGTGGGTCAGTGGGGTCTGGCAAATCAAGTTTGCTCTGCTGTTTGCTTGGGGAAATTCCATTAGTTTCTGGGGCAGTAACCAAAGTCTACGGGACTAGAAGTTATGTACCCCAAAGTCCATGGATTCAGTCTGGAACTGTAAGAGAGAACATATTGTTTGGCAAGCAAATGAAAAAGGAATTTTATGAAGATGTTTTGGATGGTTGTGCTTTGCACCAGGACATCAACATGTGGGGTGATGGAGATTTGAACCTGGTGGAGGAGAGAGGCATAAACTTGAGTGGTGGGCAGAAACAGCGGATTCAATTGGCAAGGGCTGTTTACAATGATTCTGATATTTATTTCCTGGATGATCCTTTTAGTGCTGTTGATGCTCATACCGGAACTCATTTGTTTAAGAAATGTCTCATGAAACTTCTATATGATAAAACGGTTGTTTATGCTACCCATCAACTGGAATTCTTGGAAGCTGCAGACCTCATTTTGGTAATGAAAGATGGAAAAATAGTGGAGTCAGGAAGCTATAAAGAACTTATAGCATGTCCCAACTCTGAACTTGTTCAACAAATGGCTGCTCACGAAGAAACAGTACACGAAATAAATCCATGCCAAGAAGATGATTCTGTTAGCTGCAGACCCTGCCAAAAAAATCAAATGGAAGTTGCTGAAGAAAATATTCAAGAGATCATGGAGGATTGGGGGAGAAGTAAAGAAGAGGAAGCAGAGACGGGTAGAGTGAAATGGAGTGTTTACTCAACATTTGTCACATCTGCTTATAAAGGAGCACTTGTTCCGGTTATTCTTCTCTGCCAAATTCTCTTTCAAGTTATGCAGATGGGAAGCAATTATTGGATTTCATGGGCTACAGAGCAGAAAGGCAGGGTCAACAATAAACAGCTTATGCGAACATTTGTTCTTCTATCTTTAACCGGCACCATCTTCATACTGGGAAGGACTGTTTTAATGGCAGCTGTTGCTGTGGAAACTGCTCAACGCCTTTTTCTTGGAATGATCACATCAGTTTTCAGGGCACCTGTTTCATTTTTTGTCACCACACCTTCAAGCAGAATTATGAGTAGGTCATCAACGGATCAAAGTATCGTAGACACAGACATACCATACAGATTAGCTGGACTAGTATTTGCACTTATCCAGTTATTGAGTATCATTGTGCTAATGTCCCAAGTTGCATGGCAAGTCATTCTCCTCTTTTTTGCGGTGCTTCCAATTTCCATTTGGTATCAGGCTTATTACATCACAACAGCCAGGGAATTAGCCAGGATGGTTGGGATTCGAAAGGCACCAATCTTGCACCACTTCTCAGAATCAATTGCTGGGGCTGCCACAATCCGCTGTTTCAATCAAGAGAAACTATTCTTCACCAAGGTTAAGGCTCTAATTGACGATTATTCTCGGGTAGCCTTTCACAATTTTGGCACCATGGAATGGTTGTCTGTCCGAATCAATTTCCTCTTCAATTTGGTCTTCTATTTTGTACTTGTCATCTTGGTGACTCTTCCAAGGTCTACCATTGATCCAAGCTTGGCGGGTCTGGTAGCTACTTATGGTTTGAACTTGAATGTCCTTCAGGCTTGGGTGATATGGAATCTTTGCAATGTTGAGAACAAAATGATATCAGTTGAGAGAATATTGCAGTTCTCTAGCATACCAAGTGAAGCGCCATTGATTATTCAAGATTGCAGACCTGAACCAGAGTGGCCAAAGGAGGGAAAAGTTGAACTACGTAACCTTCATATACGGTATGATCCTGCTGCTCCTATGGTCCTCAAATGTGTCACTTGTGTCTTTCCAGCACAAAAGAAAATTGGTGTAGTAGGCAGGACCGGGAGTGGAAAATCTACTCTGGTGCAAGCCCTCTTTCGAGTGGTGGAGCCTTTGGAAGGATCTATACTTATTGATGGTGTAGATATTTCCAAGATTGGTCTGCAAGATTTAAGATCTAAGCTTGGCATAATTCCTCAGGATCCAACCTTGTTTCTAGGTACTGTAAGGACTAACTTGGATCCACTAGAACAACACGAAGATCAAGAACTCTGGGAGGTTCTCAGCAAGTGCCATCTTGCTGAAATAGTAAGGCGGGATCAAAGACTTCTTGATGCACCAGTGGCCGAGAATGGAGAGAATTGGAGTGTTGGACAAAGGCAGCTTGTTTGCCTTGCTAGGCTACTACTGAAGAAAAGAAGAATTTTGGTCCTAGATGAGGCAACTGCATCCATTGACACTGCCACTGACAATTTAATTCAGAAGACAATTAGGGAAGAAACAAGTGGATGTACAGTCATTACGGTAGCACATAGAATTCCTACAGTTATTGATAATGATCGGGTTTTGGTCCTTGATGAAGGGACAATTGTAGAGTATGATGAACCGGCTCAATTGCTGCAGAACAATTCTTCTTCATTCTCAAAGTTAGTCACAGAATTTTTTAGGAGATCATCCCAAAGTAACTTTCAAAAAAGATAA 4359 0.4111 MVVLDALLGTVNVAFLYAILIWLLVDSLRQSTLSHVRVVDCFKRGPMVFAVSTVLSCAVISVMNMALAFYQYSSRKIIGFNSVSLALTWVLATIVSFYSMRTKVRENKRFGFPLVLILWWVFACSIDAILLSLKLVKGFESIDLWFFLSEDNVVDSVSLPLLVLLCFNVCARENSDVEQEQQLLLEKEEESSMEEEDEEAFTNASMWSKLAFRWLNPIFKAGRIKKLELGHIPPVPPSETAENASSVLEESLRKQKLEGGSLTKAIAYSLWKSLALNAVLAGVNTGASYIGPLLITNFVNFLLGDDGDSSIQYGLLLAFIFFLAKTVESLSQRQWYFGAQRIGIRVRAALISLIYGKSLLMKCAGPTQGRIINLINVDVERIGDFCWYIHGVWLLPVQIILALVILYINLGGTPSFAAFGVTILVMVCNTPLANKQEGLHSKIMEAKDSRIKVTSETMKNIRILKLHSWETSFLQKLLQLREIERGWLQKYLYTCSAVATLFWTSPTLVSVVTFGACILVKTELTTATVLSALATFRILQEPIYNLPELISMIIQTKVSVDRIHEFIKEDDQNQFINKLTSKISEVAIEIKPGEYAWETNDQTHTKPAIQITGKLVIKKGQKVAVCGSVGSGKSSLLCCLLGEIPLVSGAVTKVYGTRSYVPQSPWIQSGTVRENILFGKQMKKEFYEDVLDGCALHQDINMWGDGDLNLVEERGINLSGGQKQRIQLARAVYNDSDIYFLDDPFSAVDAHTGTHLFKKCLMKLLYDKTVVYATHQLEFLEAADLILVMKDGKIVESGSYKELIACPNSELVQQMAAHEETVHEINPCQEDDSVSCRPCQKNQMEVAEENIQEIMEDWGRSKEEEAETGRVKWSVYSTFVTSAYKGALVPVILLCQILFQVMQMGSNYWISWATEQKGRVNNKQLMRTFVLLSLTGTIFILGRTVLMAAVAVETAQRLFLGMITSVFRAPVSFFVTTPSSRIMSRSSTDQSIVDTDIPYRLAGLVFALIQLLSIIVLMSQVAWQVILLFFAVLPISIWYQAYYITTARELARMVGIRKAPILHHFSESIAGAATIRCFNQEKLFFTKVKALIDDYSRVAFHNFGTMEWLSVRINFLFNLVFYFVLVILVTLPRSTIDPSLAGLVATYGLNLNVLQAWVIWNLCNVENKMISVERILQFSSIPSEAPLIIQDCRPEPEWPKEGKVELRNLHIRYDPAAPMVLKCVTCVFPAQKKIGVVGRTGSGKSTLVQALFRVVEPLEGSILIDGVDISKIGLQDLRSKLGIIPQDPTLFLGTVRTNLDPLEQHEDQELWEVLSKCHLAEIVRRDQRLLDAPVAENGENWSVGQRQLVCLARLLLKKRRILVLDEATASIDTATDNLIQKTIREETSGCTVITVAHRIPTVIDNDRVLVLDEGTIVEYDEPAQLLQNNSSSFSKLVTEFFRRSSQSNFQKR* 1453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1229 1452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1196 1430 IPR027417 -
Gso5g1229 1452 ProSitePatterns ABC transporters family signature. 718 732 IPR017871 GO:0005524
Gso5g1229 1452 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 113 1447 - -
Gso5g1229 1452 Coils Coil 170 197 - -
Gso5g1229 1452 CDD ABCC_MRP_domain2 1202 1422 - -
Gso5g1229 1452 CDD ABC_6TM_ABCC_D1 276 563 IPR044746 GO:0140359
Gso5g1229 1452 Pfam ABC transporter transmembrane region 893 1131 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso5g1229 1452 Pfam ABC transporter transmembrane region 276 542 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso5g1229 1452 Gene3D - 611 837 IPR027417 -
Gso5g1229 1452 SUPERFAMILY ABC transporter transmembrane region 269 568 IPR036640 GO:0005524|GO:0016021
Gso5g1229 1452 SMART AAA_5 1230 1421 IPR003593 -
Gso5g1229 1452 SMART AAA_5 619 793 IPR003593 -
Gso5g1229 1452 Gene3D ABC transporter type 1, transmembrane domain 856 1185 IPR036640 GO:0005524|GO:0016021
Gso5g1229 1452 Gene3D ABC transporter type 1, transmembrane domain 261 573 IPR036640 GO:0005524|GO:0016021
Gso5g1229 1452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 614 806 IPR027417 -
Gso5g1229 1452 Pfam ABC transporter 1222 1369 IPR003439 GO:0005524
Gso5g1229 1452 Pfam ABC transporter 615 745 IPR003439 GO:0005524
Gso5g1229 1452 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 275 555 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso5g1229 1452 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 590 816 IPR003439 GO:0005524
Gso5g1229 1452 CDD ABCC_MRP_domain1 588 793 - -
Gso5g1229 1452 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 891 1167 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso5g1229 1452 CDD ABC_6TM_ABCC_D2 889 1179 IPR044726 GO:0140359
Gso5g1229 1452 Gene3D - 1187 1440 IPR027417 -
Gso5g1229 1452 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1204 1438 IPR003439 GO:0005524
Gso5g1229 1452 PANTHER OS01G0902100 PROTEIN 113 1447 - -
Gso5g1229 1452 SUPERFAMILY ABC transporter transmembrane region 891 1184 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1229 Gso-Chr5 35816366 35822818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1229 605 838 Calmodulin-binding Proteins AT2G36910 29.200 5.08e-21 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1229 - - gmx:100780998 2740.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1229 5 35816366 35822818 Gso8g0845 8 7849741 7856406 GST