Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1225 ATGGACAATGGTTGCTTCTCTTCTCCACGCCACGATGCTTTTCCAGCTGGTTTGCGAGTTCTTGTTGTTGATGATGATCCAACATGGTTGAGGATCCTTGAAAAGATGCTCAAGAAGTGCTTATATGAAGTGACTACATGTTGTTTAGCAACAGAGGCCCTGAAAAAACTTCGTGAAAGGAAAGATGCATATGACATAGTGATCAGCGATGTGAACATGCCTGACATGGATGGTTTCAAACTTCTGGAGCAAGTTGGACTTGAGATGGATCTTCCTGTTATCATGATGTCTGTTGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAACTGCGAAACATATGGCAACATGTCTTTAGAAAAAGGATGCATGAGGCAAGAGATTTTGAAAGTCACGAGGGTTTTGACTTTGAGGGCATTCACTTAATGAGAAATGGATCAGATCACTCTGATGATGGTAACCTGTTTGCTGTAGAAGAAATTACCTCAATTAAGAAAAGAAAAGATGCAGATAACAAACATGATGACAAAGAATTTGGAGATCATTCTCCCATGAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCATCAGAAGTTTGTCAAAGCAGTGAATCAAATTGGATTTGATAAAGTTGGTCCCAAGAAAATTCTAGATCTGATGAATGTTCCGTGGTTGACTAGAGAAAATGTTGCTAGTCACTTGCAGAAATACAGGCTCTACTTGAGTAGGTTGCAAAAGGAGAATGATCAGAAATCTTCCTCAAGTGGAATAAAGCATTCGGATTCACCTTCAAAAGATCCAGGAAGTTTTAGTATTCTAGACACTGCAAACAAGCAACAAAATGATGTTGCCATTGACAGCTTCAGTTATTCAGATGGAAGTTTACTACTTCAGATGGATGCCACTAGTCATGAAGGTAATCTCAAGGGAATTGTGTCAGAGCCTACAACAGAAAAAAGAAGAGGTTCCACTGGTGACATTCCTGACCCCAAGATACAAAAAAGTTCACAGAAGAGCCTCAATCAACCTTTTACATCTGTAGAGTCATCAGAAGCAAACCATGCAGTCTTTGATTGCACCATACCAACACAGTACTCTTGGAGTGAGTTTCCAAAAGGGCCACTCAAAGAAGAACAGAAGACACTTGTTCAATTAGAGGATAGCCTCAGCCAGTTGCCATTGCATGGTAATGGTACACAGCATCACATTCACGTTGATCAGTCACAATCAATTGCCTCAATTAATTCCAATCCCTCTATAACAGAAGAAGAGGTTGCTGCCAAATTAGAGACCAAACCGTTGTATGCTGGTTACGAGAGTGATTATGTGAGTCCTGTGAGTTCAATAGGATCTGCAGTTGAAGTCTTTCCTAGTCAATCCAAAAGCCTTATGGTGAATGATCAATCTTCAGAGCCCACTTTCACCTCAAACTTGAGCTTGAAGGCTCAGGGATTTAATCGAGATTGCATTTCTGATCTGGATTTTTACCAAAGAAACCTATTATTGGGTGGTGAGGTAGCTTCTGCACCTTTGGAGGAGGACCTGAATTTCTTTTTGCTACAAACTGAATGCTACAACATGAATTTTGGCCTGCAGAATATAGATATGTCAGAGTATTATGATCCAAGGCTTATTGCTGAAGTCCCTAGCCACTTTTATGATTCAGCAGATTATTCATCAGTAGATCAAAGTCTATTCATAGCATGA 1755 0.4011 MDNGCFSSPRHDAFPAGLRVLVVDDDPTWLRILEKMLKKCLYEVTTCCLATEALKKLRERKDAYDIVISDVNMPDMDGFKLLEQVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMHEARDFESHEGFDFEGIHLMRNGSDHSDDGNLFAVEEITSIKKRKDADNKHDDKEFGDHSPMKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDQKSSSSGIKHSDSPSKDPGSFSILDTANKQQNDVAIDSFSYSDGSLLLQMDATSHEGNLKGIVSEPTTEKRRGSTGDIPDPKIQKSSQKSLNQPFTSVESSEANHAVFDCTIPTQYSWSEFPKGPLKEEQKTLVQLEDSLSQLPLHGNGTQHHIHVDQSQSIASINSNPSITEEEVAAKLETKPLYAGYESDYVSPVSSIGSAVEVFPSQSKSLMVNDQSSEPTFTSNLSLKAQGFNRDCISDLDFYQRNLLLGGEVASAPLEEDLNFFLLQTECYNMNFGLQNIDMSEYYDPRLIAEVPSHFYDSADYSSVDQSLFIA* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1225 584 MobiDBLite consensus disorder prediction 322 363 - -
Gso5g1225 584 SUPERFAMILY CheY-like 17 142 IPR011006 -
Gso5g1225 584 Pfam Myb-like DNA-binding domain 204 254 IPR001005 -
Gso5g1225 584 MobiDBLite consensus disorder prediction 264 289 - -
Gso5g1225 584 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 559 IPR045279 GO:0009736
Gso5g1225 584 CDD REC_typeB_ARR-like 20 134 - -
Gso5g1225 584 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 202 255 IPR006447 GO:0003677
Gso5g1225 584 PIRSF RR_ARR_type-B 2 569 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gso5g1225 584 SMART REC_2 18 130 IPR001789 GO:0000160
Gso5g1225 584 MobiDBLite consensus disorder prediction 345 363 - -
Gso5g1225 584 Gene3D - 200 261 - -
Gso5g1225 584 SUPERFAMILY Homeodomain-like 200 259 IPR009057 -
Gso5g1225 584 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
Gso5g1225 584 Gene3D - 18 182 - -
Gso5g1225 584 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Gso5g1225 584 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1225 Gso-Chr5 35759734 35764567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1225 12 268 Response Regulator Gene Family AT2G25180 54.545 8.59e-83 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gso5g1225 Response_reg 1.3e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1225 - K14491 gmx:100778324 1173.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1225 5 35759734 35764567 Gso8g0840 8 7799624 7803998 GST
Gso18g0094 18 776405 780892 Gso5g1225 5 35759734 35764567 PCT
Gso13g1527 13 30716949 30721352 Gso5g1225 5 35759734 35764567 PCT
Gso5g1225 5 35759734 35764567 Gso18g0094 18 776405 780892 PCT
Gso5g1225 5 35759734 35764567 Gso13g1527 13 30716949 30721352 PCT