Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1223 ATGGAAATGATGGCATACCATTTTTCCCGGCTACCTTACTCGGATTCCCTCAAACTGCTAGAGGCTGATATACAGCATGCAAATGCTTTGGCTGCTGCAATTCCCAGAGCCAAGGGTGGGACTCTTCTCCAAATGAAATTGGTGTACAACCACTTGGCTCCTCTCTTTCTGTTGTTGCTACAGTGGATGGAATGTTCTTGTACATGCTTTCTACACAGATATCTTGACCTCTTCCACATAGTTGTATACAAGGTACACAATGATGGTAGATCAAATATGACTTCTCATGGAAGGAAAGCAAGCATCCGGGACTTTTATGCCGTTATCCTTCCATCCCTCGAGCGGCTTCATGGTAGCTTGGAGAAGTTGAACATTTGTAAGAAAGGTCATTCTAGCATAGATGGCTCAAGTTTTGGCAAGAAAATGATTGAAGGTGATGAGAAACTAATCAATATCGATTTGGAAAGAGAAGATGAATGTGGGATATGCTTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGGAACACCCGGTCAGAGTCATGCCCTTTTTGCCGTGGTAGCTTAAGGAGAGTTAATTCTGAGGATCTATGGGTACTCACTTGTGATGAAGATGTTGTTGATGCTGAAACAGTTTCCAAAGAGGACCTGTTGCGTTTCTACCTTTATATCAACAGCTTACCTAAAGATCACCCTGATGCACTTTTCTTAATGTATTATGAATACCTGATTTGA 771 0.4215 MEMMAYHFSRLPYSDSLKLLEADIQHANALAAAIPRAKGGTLLQMKLVYNHLAPLFLLLLQWMECSCTCFLHRYLDLFHIVVYKVHNDGRSNMTSHGRKASIRDFYAVILPSLERLHGSLEKLNICKKGHSSIDGSSFGKKMIEGDEKLINIDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRKWNTRSESCPFCRGSLRRVNSEDLWVLTCDEDVVDAETVSKEDLLRFYLYINSLPKDHPDALFLMYYEYLI* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1223 256 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 256 - -
Gso5g1223 256 Pfam Ring finger domain 158 198 IPR001841 -
Gso5g1223 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 209 IPR013083 -
Gso5g1223 256 ProSitePatterns Zinc finger RING-type signature. 175 184 IPR017907 -
Gso5g1223 256 PANTHER RING FINGER PROTEIN 41, 151 6 256 - -
Gso5g1223 256 SMART ring_2 160 197 IPR001841 -
Gso5g1223 256 ProSiteProfiles Zinc finger RING-type profile. 160 198 IPR001841 -
Gso5g1223 256 SUPERFAMILY RING/U-box 150 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1223 Gso-Chr5 35738292 35740671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1223 92 201 RAD5 or RAD16-like Gene Family AT5G05130 28.696 5.29e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1223 - - gmx:100790422 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1223 5 35738292 35740671 Gso8g0838 8 7779699 7782292 GST
Gso18g0097 18 803906 806038 Gso5g1223 5 35738292 35740671 PCT
Gso13g1525 13 30686407 30688586 Gso5g1223 5 35738292 35740671 PCT
Gso5g1223 5 35738292 35740671 Gso18g0097 18 803906 806038 PCT
Gso5g1223 5 35738292 35740671 Gso13g1525 13 30686407 30688586 PCT