Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1219 ATGAAACTTTCTTCATCGGGTTTTAGTTCTCCACCTCAGGAAGGAGAAAAGCGAGTTCTAGATTCAGAACTTTGGCATGCTTGTGCTGGTCCTCTTGTTTCTTTACCAGCTGTTGGAAGCCGAGTGGTATACTTTCCACAAGGTCACAGTGAACAGGTTGCTGTGTCTACCAACAGGGAAGTGGATGGCCATATACCTAACTATCCAAGCTTACCACCGCAGCTTATTTGTCAACTTCATAATGTGACTATGCATGCAGATACTGAGACAGATGAAGTGTATGCTCAGATGACCTTGCAACCTCTTAATCCTCAAGAACAGAAGGAGGCATACCTTCCAGCTGAGTTGGGCACTCCGAGTAAACAGCCAACAAACTACTTCTGCAAAATTTTGACAGCCAGTGACACTAGCACTCATGGGGGATTCTCTGTTCCTCGCAGGGCAGCTGAAAAAGTTTTTCCTCCATTGGACTTTTCACAACAGCCTCCTTGTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGAGTGGAAATTTAGACATATCTTCCGTGGCCAGCCCAAAAGGCATCTACTTACAACAGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTGCTGTTTATCTGGAATGAAAAGAATCAATTGCTTCTTGGCATTCGGCGGGCTAATCGACCTCAACCAGTGATGCCTTCATCAGTGTTGTCAAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCTCATGCGGCTGCAACTAATAGTCGTTTTACCATCTTTTATAACCCACGTGCTAGCCCATCAGAATTTGTCATACCTTTTGCAAAGTATGTTAAAGCCGTGTATCATACTCGAGTTTCAGTTGGTATGCGCTTCAGGATGCTGTTTGAAACAGAGGAATCCAGTGTGCGTCGATACATGGGCACAATAACTGGCATTAGTGACTTGGATTCTGTCCGGTGGCCAAATTCACATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACAGCAGGAGAGAGGCAACCTCGAGTGTCTTTATGGGAAATTGAGCCATTAACAACATTTCCAATGTATCCATCTCCATTCCCCCTTAGGCTTAAGAGACCGTGGCCTCCAGGACTGCCTTCATTCCATGGCTTGAAGGATGATGATTTTGGTACAAATTCTTCACTAATGTGGCTTCGAGACACAGACAGAGGTCTTCCATCTCTTAATTTTCAGGGGATTGGTGTTAGTCCTTGGTTGCAGCCAAGGCTTGATCCATCAATGGTGAATTATCAATCAGATATGTACCAAGCTATGGCTGCCGCTGCACTTCAGGATATGTGGACTTCAGATCCTTCCAAACAGCATCCTACGTCCGCAATTCAATTTCAGCAACAGCAGAACTTCCCCAACAGGACTTCTGCCTTAATGCAAACTCAAATGTTGCAGCAGTCTCAACCTCAGCAGGCTTTTCCAAATAGTCAAGAAAATTCACATCCATCTCCATCTCCATCTCAATCTCAGGCTCAAACTCAAACACACTTTCAGCAGCATCTACAGCATCAGCACTCATTCAATACTCAGAATCAGCATAATCTTCTGCAGCAGCAGCAACAATCGCAATTGCAACAGCAACAAGTGGTAGATCATCAGCAGATTTCAAGTGCCGTCTCTACAATGTCTCAGTTTGTTTCAGCACCTCAGTCTCAATCACCACCAATGCAAGCTATCTCTTCACTTGGCCATCAGCAAAGCTTTTCTGATTCAAATGGGAACCCTGTGACTACTGCTGTTGTTTCTCCCCTGCATAGTATATTGGGTTCATTTCCCCAGGATGACACATCTCACCTTCTCAACCTTCCTAGATCCACCTCTTGGGTTCCTGTTCAACATTCAACTGCATGGCCGTCCTCCAAGCGTGTTGCAGTGGATCCTCTCTTTTCTTCTGGAGCATCTCAATGTGTTCTACCTCAAGTGGAGCAGTTAGGGCAGCCACAGAGTACCATGGCTCAAAATGGCATTGCATTGCCACCCTTTCCTGGTAGGGAGTGTACAATAGAAGGAAGCAATGATCCACAAAATCATCTTTTGTTTGGTGTCAATATAGAGCCCTCATCACTCCTAATGCATAATGGTATGTCAAGTCTTAAGGGAGTCAGCAGCAACAGTGACTCACCCACCATACCTTTTCAATCATCTAATTACCTGAACACCACAGTACCTGATTCTTCATTGAATCCTGGAATGACACACAATATTGGTGAATCGGGCTTCCTGCAAACTCCAGAAAATGGGGGGCAAGGAAACCCAACTAACAAAACCTTTGTGAAGGTTTACAAGTCAGGGTCCTTTGGAAGATCCTTGGACATCACTAAATTCACCAGCTACCCTGAGCTACGCAGTGAGCTTGCTCGTATGTTTGGCCTGGAAGGTGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCAAGAGAATGACGTTCTTCTCCTTGGTGATGGCCCGTGGCCGGAATTTGTAAATAGTGTAGGGTGCATCAAGATACTTTCCCCTCAGGAAGTGCAGCAAATGGGCAACAATGGCCTTGAGCTTCTTAACTCTGTCCCCATTCAGAGGCTCTCTAACGGCGTCTGTGACGACTACGCAGGCCGTGAGGACCCAAGAAATTTAAGCACTGGGATAACAATTGTGGGGTCTTTAAACTACTGA 2727 0.4576 MKLSSSGFSSPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNREVDGHIPNYPSLPPQLICQLHNVTMHADTETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPCQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQPVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPFAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGLKDDDFGTNSSLMWLRDTDRGLPSLNFQGIGVSPWLQPRLDPSMVNYQSDMYQAMAAAALQDMWTSDPSKQHPTSAIQFQQQQNFPNRTSALMQTQMLQQSQPQQAFPNSQENSHPSPSPSQSQAQTQTHFQQHLQHQHSFNTQNQHNLLQQQQQSQLQQQQVVDHQQISSAVSTMSQFVSAPQSQSPPMQAISSLGHQQSFSDSNGNPVTTAVVSPLHSILGSFPQDDTSHLLNLPRSTSWVPVQHSTAWPSSKRVAVDPLFSSGASQCVLPQVEQLGQPQSTMAQNGIALPPFPGRECTIEGSNDPQNHLLFGVNIEPSSLLMHNGMSSLKGVSSNSDSPTIPFQSSNYLNTTVPDSSLNPGMTHNIGESGFLQTPENGGQGNPTNKTFVKVYKSGSFGRSLDITKFTSYPELRSELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVGCIKILSPQEVQQMGNNGLELLNSVPIQRLSNGVCDDYAGREDPRNLSTGITIVGSLNY* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1219 908 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso5g1219 908 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 888 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso5g1219 908 MobiDBLite consensus disorder prediction 481 527 - -
Gso5g1219 908 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Gso5g1219 908 Gene3D - 125 228 IPR015300 -
Gso5g1219 908 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Gso5g1219 908 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Gso5g1219 908 PANTHER AUXIN RESPONSE FACTOR 1 888 - -
Gso5g1219 908 ProSiteProfiles PB1 domain profile. 775 859 IPR000270 GO:0005515
Gso5g1219 908 SMART B3_2 127 229 IPR003340 GO:0003677
Gso5g1219 908 CDD B3_DNA 126 227 IPR003340 GO:0003677
Gso5g1219 908 Gene3D - 771 864 - -
Gso5g1219 908 Gene3D - 291 363 - -
Gso5g1219 908 SUPERFAMILY CAD & PB1 domains 771 851 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1219 Gso-Chr5 35679643 35686911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1219 1 483 B3 DNA Binding Superfamily AT1G30330 84.221 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso5g1219 B3 1.7e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1219 - - gmx:100777789 1724.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1219 5 35679643 35686911 Gso8g0832 8 7726866 7733723 GST
Gso18g0145 18 1216717 1223750 Gso5g1219 5 35679643 35686911 PCT
Gso13g1479 13 30275016 30283752 Gso5g1219 5 35679643 35686911 PCT