Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1207 ATGGAGGAGGAGGATGAGATTCAAGCACAGAAGGTGAGAAGAAGAAGAGGCAGTGATGGAGAGAGCACGAACAGGTTCCACAGCAGCTGGCACCACCACCACCACCACTCTTCGAGGATCATAAGGGTGTCTCGTGCATCTGGTGGCAAAGACAGGCACAGCAAAGTGATGACTTCAAAAGGGTTGAGAGATAGAAGGGTTAGGCTTTCTGTGACCACTGCCATTCAGTTCTATGACCTTCAAGATCGCTTGGGTTATGACCAACCTAGTAAAGCTGTGGAATGGCTTATCAAATCTGCTTCTGATTCCATTTCTGAACTTCCTTCTTTGAACAATTTCCCTGACACCCCCAAAAGTGATGATCATGAGAAGAGAGCAAACACTGATGTTGCTGCTGGGGCAGTAGATGGTGAGAATTATGAAAATGAGAATGGCAATAACAATAACCAGAGTCAGAACATGTCTTTGTCTAAATCTGGTTGTAGTAGCACTTCTGAGACAAGCAAAGGTTCTGGCTTGTCCCTCTCAAGGTCTGATATTCGTGTGAAGGCTAGAGAGAGGGCAAGGGAGAGAACAACAAAGGAAAAGGAGAAAGAGAAAAATGAGTCTCATCATCATCACAGCAATGTTGTTGTTCCTCATCATCGTCATCATCATCATCATAACCCCGTTTCACAAACAGCTTCTTTCACTGAGCTTCTCACTGGTGGGATTCCCAAAGGGTGTGATGATGAGGAGCCTAATAACATGATGATGTTCAACAAAGCAGCTGCAGCAGCATCATCTGGTAGACAGCAATGGTGTTCATCATCATCAGCAGCAGCAGCAGCACCTATGGACTACTTTCTGGGGCCTTCCTCTTCTAGAACAACAACAACACCACCACACAATCACCATCACCATCATCATCAATATTCTTCTTCTGGTGGGTTCTCATTGGCACAAATCCAACTAGGACATTCTCTTCCTGAGGCAATGAATCACAATGTTTCAGCATTCAACAATAATGTGAGTGGTGAGAACCAAAACCACTCATCATCAGATCCTCATCTGCAACAGCAGCAACACTTCTCATTCATACCGGATCATCTTATGTCAGCTGTGGTTACTTCTTCTTCTCATCATCAACCTAGCGGGAGCGACTACAATCTGAACTTCACCATGTCTTCGGGCCTCGCTGGTTACAATAGGGGGACCCTTCAGTCCAATTCTCCGTCTCTTTTGCCTCACTTGCAGAGGTTTTCGCCTCTAGACGGATCCACTGTACCTTTCTTCATTGGAGCTGCTCCTTCTGCTGCAGTTGCTGCTCCTGCCATGGAGAACAACACCACCACCACCAACAACCATCACCACCATCAGTTCTCATCTGGTTTCGATGGCAGCCGCTTGCAACTCTACTATGGGCATTCTGACCAGAAGGGGAAAGCCAAAAACTGA 1437 0.4628 MEEEDEIQAQKVRRRRGSDGESTNRFHSSWHHHHHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSASDSISELPSLNNFPDTPKSDDHEKRANTDVAAGAVDGENYENENGNNNNQSQNMSLSKSGCSSTSETSKGSGLSLSRSDIRVKARERARERTTKEKEKEKNESHHHHSNVVVPHHRHHHHHNPVSQTASFTELLTGGIPKGCDDEEPNNMMMFNKAAAAASSGRQQWCSSSSAAAAAPMDYFLGPSSSRTTTTPPHNHHHHHHQYSSSGGFSLAQIQLGHSLPEAMNHNVSAFNNNVSGENQNHSSSDPHLQQQQHFSFIPDHLMSAVVTSSSHHQPSGSDYNLNFTMSSGLAGYNRGTLQSNSPSLLPHLQRFSPLDGSTVPFFIGAAPSAAVAAPAMENNTTTTNNHHHHQFSSGFDGSRLQLYYGHSDQKGKAKN* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1207 478 ProSiteProfiles R domain profile. 178 196 IPR017888 -
Gso5g1207 478 MobiDBLite consensus disorder prediction 332 352 - -
Gso5g1207 478 Coils Coil 182 202 - -
Gso5g1207 478 MobiDBLite consensus disorder prediction 134 206 - -
Gso5g1207 478 ProSiteProfiles TCP domain profile. 49 107 IPR017887 -
Gso5g1207 478 Pfam TCP family transcription factor 48 198 IPR017887 -
Gso5g1207 478 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 478 IPR005333 GO:0003700
Gso5g1207 478 MobiDBLite consensus disorder prediction 1 27 - -
Gso5g1207 478 MobiDBLite consensus disorder prediction 1 54 - -
Gso5g1207 478 MobiDBLite consensus disorder prediction 140 175 - -
Gso5g1207 478 MobiDBLite consensus disorder prediction 179 206 - -
Gso5g1207 478 PANTHER TRANSCRIPTION FACTOR TCP24 9 478 - -
Gso5g1207 478 MobiDBLite consensus disorder prediction 285 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1207 Gso-Chr5 35460132 35469136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1207 21 478 TCP Transcription Factor Family AT4G18390 40.619 3.87e-77 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso5g1207 TCP 2.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1207 - - gmx:100816799 721.85