Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1201 ATGAGAAAGAATTGCAAGTTGGAACTTCGCCTTTTTCCTCCCTCCCTCTCCGATCTTCGCCCCATGATGGAAGCAGAAGTGAGTGATAGCCCACAACAACAGGACCCTCACCATCAACAGCAACAACAACTACAACATCCGCTGACCATTTTCTATGATGGCAAGATTTGTGTCTCAGATGTCACAGAGCTTCAGGCCAGATCCATATTAATGCTAGCAAATAAAGAGACGGAGAGAAGGGTGATGACACCAACTGGGTCAGAACCATCTTCACCAATATTACTGCAATCACCTCATAATAACATGTATAGCCCCAGCACTGGACTTTCCATGAAAAGATCACTGCAGAGGTTTCTCCAGAAGAGGAAGAATCGTGTCCAAGAAACATCCCCATACCATCACTAG 405 0.4543 MRKNCKLELRLFPPSLSDLRPMMEAEVSDSPQQQDPHHQQQQQLQHPLTIFYDGKICVSDVTELQARSILMLANKETERRVMTPTGSEPSSPILLQSPHNNMYSPSTGLSMKRSLQRFLQKRKNRVQETSPYHH* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1201 134 MobiDBLite consensus disorder prediction 79 108 - -
Gso5g1201 134 MobiDBLite consensus disorder prediction 25 44 - -
Gso5g1201 134 MobiDBLite consensus disorder prediction 83 108 - -
Gso5g1201 134 Pfam Jas motif 112 132 IPR018467 -
Gso5g1201 134 ProSiteProfiles Tify domain profile. 41 75 IPR010399 -
Gso5g1201 134 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 1 134 IPR040390 -
Gso5g1201 134 SMART tify_2 41 75 IPR010399 -
Gso5g1201 134 MobiDBLite consensus disorder prediction 27 44 - -
Gso5g1201 134 Pfam tify domain 44 74 IPR010399 -
Gso5g1201 134 PANTHER - 1 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1201 Gso-Chr5 35387858 35390681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1201 1 133 Tify Gene Family AT1G30135 46.377 3.47e-28 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gso5g1201 tify 3.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1201 - - gmx:100781356 240.35