Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1191 ATGGGTCGTGGAAGAATACCTATGGAACTCATCCAGAAGGAGAAAGCCCGTAAGAAAACTTTTGACAAGAGAAAGAAAGGATTATTGAAGAAAGCCTATGAAATTTCCACTCTTTGTGCGGTTGATGTTGGCATAGTTATCTATGCTCCCAAGTTTCTCAATGAACCCGAAACATGGCCCCAAGACCAAGATTCAAGAGAGGTCAAACGTATCATTCAAAAATATCAAAACACCACTAGTGACAGGTATTCTAAGATGTATAATGTGCAAGAGTATTTTAACGATAGAATGAAAAAGATTGAAGGTGAGATTTCCAAAGTGCACAAAGAGAAGATCAAGCTCATGTACCCAACTTGGGATGACTCTTACAATACTCTTGGAGAGGAACAATTGCGGATGTTTGTTAGCATTTTGGATGTTAAACTTGATGCTTGTAATCAAAGGATGAATATGTTAAAGCGGGATTCAAAGGGAAAAAGAATAACTAAATCAGACAAAACTCAGACACTTACTCCCTGCATGACCTCAAATTTCATGTCTCAAACACAACAACTTTTTCCATCTAGTGATAACAACCAAGTAGCATTTTACCCATGTCAGCTTAGCCAAAGTTCTCAACCTTCCATGTTCCATTTTGGTCAAAGTTGCATGCAATTCATGGAAAAAAATGCAATGGTGGATTGGGCTAATCAAGTTGGTGTCGGTGCTTGTGATCCTAAAATGGGTGTATTAAAGGAGGATGGATCTGACAAAAATCAAAACTCCTCACCATGCTACAACGGAAATATGCAAACTCTTCCTTCTCAATTGCAGTACGATGCAACTTTTCAGACCCTACCAAATCAACTAGAACAACCATCAGGGGTTGAACTTAATGGTTTTTACGATTCAAATATGCTTCAATTATCTCAATTTTTTAACTACATGCATGGAAGGAAGTAG 942 0.379 MGRGRIPMELIQKEKARKKTFDKRKKGLLKKAYEISTLCAVDVGIVIYAPKFLNEPETWPQDQDSREVKRIIQKYQNTTSDRYSKMYNVQEYFNDRMKKIEGEISKVHKEKIKLMYPTWDDSYNTLGEEQLRMFVSILDVKLDACNQRMNMLKRDSKGKRITKSDKTQTLTPCMTSNFMSQTQQLFPSSDNNQVAFYPCQLSQSSQPSMFHFGQSCMQFMEKNAMVDWANQVGVGACDPKMGVLKEDGSDKNQNSSPCYNGNMQTLPSQLQYDATFQTLPNQLEQPSGVELNGFYDSNMLQLSQFFNYMHGRK* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1191 313 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso5g1191 313 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso5g1191 313 PANTHER MADS BOX PROTEIN 3 244 - -
Gso5g1191 313 CDD MADS_SRF_like 2 75 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gso5g1191 313 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Gso5g1191 313 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Gso5g1191 313 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Gso5g1191 313 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 244 - -
Gso5g1191 313 SUPERFAMILY SRF-like 2 98 IPR036879 GO:0003677|GO:0046983
Gso5g1191 313 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1191 Gso-Chr5 35199978 35200919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1191 1 198 Type I MADS-box Gene Family AT5G55690 32.195 1.04e-22 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso5g1191 SRF-TF 1.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1191 - - gmx:102660566 619.002