Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1186 ATGGAAAAGGACAAGTCTCACACTCACAGCTTTCTTCACAGTATCGTCAAACACTTCAAATTCGGTTCACCGAAAGAGCGAAACAATGAAGCTGACGTACACCAAATGGCTGCACAGGAGCAGAAGATCTTTGCCTACGAAACCTTGACAGCTGCAACTAAGAATTTTAGTGCTATTCATAAGCTTGGTGAGGGAGGTTTTGGACCAGTCTACAAGGGGAAGCTGAATGATGGGAGAGAGATTGCTGTGAAGAAGTTATCACACACGTCAAACCAAGGGAAGAAGGAGTTCATGAATGAGGCCAAGTTGTTGGCACGTGTGCAGCATCGGAATGTGGTCAATTTGGTGGGCTATTGTGTCTATGGCACCGAGAAGCTACTTGTTTATGAGTATGTTGCTCATGAAAGCCTAGACAAACTTCTATTCAAATCAGAAAAGAGAGAGGAGCTTGATTGGAAACGTAGGGTTGGAATAATCACAGGCGTGGCAAAGGGGTTGCTTTATCTTCACGAAGACTCGCACAATTGCATCATCCATCGCGATATAAAGGCGAGTAACATCTTGCTTGATGAGAAATGGACGCCCAAGATTGCAGATTTTGGCATGGCTCGGCTCTTCCCGGAAGATCAAACCCAGGTCAATACACGTGTGGCTGGAACCAATGGGTATATGGCTCCGGAATACGTGATGCATGGAAATCTATCGGTGAAGGCAGATGTATTTAGCTATGGAGTTTTGGTATTGGAGTTGATCACCGGCCAACGAAACTCATCTTTTAATTTGGACGTGGACGCGCAGAATCTGCTAGATTGGGCATACAAGATGTTCAAGAAAGGGAAGAGCCTAGAACTTGTGGATTCTGCATTAGCATCTAGGATGGTAGCTGAAGAAGTAGCAATGTGCGTTCGGCTGGGTTTGTTATGCACTCAAGGCGATCCTCAGCTACGCCCCACGATGAGGCGCGTGGTGGCGATGCTGTCGAGGAAGCAAGGGAACATGCAAGAACCTACGAGACCAGGAATACCAGGTTCAAGATACAGAAGACCACCTAGGAGACACTCCGCATTGTCTTCCACATTGGGTACCTCTGGTTCTGATTCTAGTAATAATGATAATACCACGGTTACTACTAGTGCCACAGGGACTAGCTCAGCTACTGCAGAAACAGACCCCAAAGGGAAACGTCCAATGCGGGAGGCTTAG 1203 0.468 MEKDKSHTHSFLHSIVKHFKFGSPKERNNEADVHQMAAQEQKIFAYETLTAATKNFSAIHKLGEGGFGPVYKGKLNDGREIAVKKLSHTSNQGKKEFMNEAKLLARVQHRNVVNLVGYCVYGTEKLLVYEYVAHESLDKLLFKSEKREELDWKRRVGIITGVAKGLLYLHEDSHNCIIHRDIKASNILLDEKWTPKIADFGMARLFPEDQTQVNTRVAGTNGYMAPEYVMHGNLSVKADVFSYGVLVLELITGQRNSSFNLDVDAQNLLDWAYKMFKKGKSLELVDSALASRMVAEEVAMCVRLGLLCTQGDPQLRPTMRRVVAMLSRKQGNMQEPTRPGIPGSRYRRPPRRHSALSSTLGTSGSDSSNNDNTTVTTSATGTSSATAETDPKGKRPMREA* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1186 400 ProSiteProfiles Protein kinase domain profile. 56 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1186 400 PANTHER RECEPTOR-LIKE KINASE 8 377 - -
Gso5g1186 400 SUPERFAMILY Protein kinase-like (PK-like) 41 350 IPR011009 -
Gso5g1186 400 SMART serkin_6 56 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1186 400 MobiDBLite consensus disorder prediction 327 400 - -
Gso5g1186 400 CDD STKc_IRAK 62 328 - -
Gso5g1186 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Gso5g1186 400 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 8 377 - -
Gso5g1186 400 Gene3D Transferase(Phosphotransferase) domain 1 133 338 - -
Gso5g1186 400 MobiDBLite consensus disorder prediction 355 389 - -
Gso5g1186 400 Gene3D Phosphorylase Kinase; domain 1 18 131 - -
Gso5g1186 400 Pfam Protein tyrosine and serine/threonine kinase 59 326 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1186 Gso-Chr5 35137828 35142255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1186 44 341 Receptor kinase-like Gene Family AT4G11530 52.000 1.03e-109 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso5g1186 PK_Tyr_Ser-Thr 2.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1186 - - gmx:100810930 750.74