Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1182 ATGATGACTCCAAACTTGAACTTGGAACCTGAAAATCATTCAGAAGGCAGCAGCCAAGTGGCTTCAAATGTATCCTTTCATGAAGCATCTCATGATCTTAAAAAGGGCAGCACCACCACTTCCTCCTGTCTCACAAAGGATGAAACTGATCCAGGTTCTATTACCCTTGACTTGACACTCAACTTTAATTCCGGTGATGGCGAGTTGAAAGGCTCAAGTGATGCTAGCAGTGAAGTTGGAGCTGAAGCTCCTGCTTCAGCATCAGCAACTCCAAGGGTTTTTTCTTGTAACTACTGCAGGAGGAAGTTCTATAGCTCTCAGGCATTAGGTGGTCATCAAAATGCTCACAAAAGGGAGAGGACAATGGCTAAGCGTGCAATGCGAATGGGGATGTTCACTGAGAGGTATACAAGCTTGGCATCTCTACCTCTTCATGGTTCACCTTTCAGGTCTCTTGGCCTTGAAGCTCATTCTGCAATGCACCGAAGACACGTGCCGTCCTCCGCGGCAGCACTGAGGGCTCCTGATATGAGAGCTGCTGCAAAATTTGAGAGAAACCAATTTGGATCACTGGTTTTCGTGGAAGATGATGATGTTGGATTCTTTTGGCCTGGCAGTTTCAGACAGGTAGACCAACAAGGAGCTGGTGTTAATGTAGGACATGCTCAAAGTTCAAATGCTAGTTTAATTCCAATGGTGCCTCCTCCACCACAAGCTTCTACATCTCCTGATCTCACATTGAAGCTTTAA 750 0.4587 MMTPNLNLEPENHSEGSSQVASNVSFHEASHDLKKGSTTTSSCLTKDETDPGSITLDLTLNFNSGDGELKGSSDASSEVGAEAPASASATPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSPFRSLGLEAHSAMHRRHVPSSAAALRAPDMRAAAKFERNQFGSLVFVEDDDVGFFWPGSFRQVDQQGAGVNVGHAQSSNASLIPMVPPPPQASTSPDLTLKL* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1182 249 Gene3D Classic Zinc Finger 72 140 - -
Gso5g1182 249 MobiDBLite consensus disorder prediction 226 249 - -
Gso5g1182 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Gso5g1182 249 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Gso5g1182 249 MobiDBLite consensus disorder prediction 1 26 - -
Gso5g1182 249 MobiDBLite consensus disorder prediction 67 86 - -
Gso5g1182 249 PANTHER ZINC FINGER PROTEIN JAGGED 7 249 IPR045320 GO:0003700
Gso5g1182 249 MobiDBLite consensus disorder prediction 35 50 - -
Gso5g1182 249 SUPERFAMILY beta-beta-alpha zinc fingers 92 122 IPR036236 -
Gso5g1182 249 PANTHER ZINC FINGER PROTEIN 3-RELATED 7 249 - -
Gso5g1182 249 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1182 Gso-Chr5 35082229 35087701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1182 88 249 C2H2 Transcription Factor Family AT1G66140 44.271 5.80e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso5g1182 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1182 - - gmx:100775305 496.893