Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1165 ATGTTAGACAACAACAACAGTGCTTCTAATTCTGGTGCACCATCTTCTTCTGATGCCGCCTTTGCATTATCTGAAAATGGGGTGGCTAACAACAAAAGGAAAAGAAGACCAGCAGGCACACCCGATCCAGATGCCGAGGTTGTGTCTCTCTCACCAACCACCTTGCTGGAATCTGACAGATATGTTTGTGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAATCTTCAAATGCACAGGAGGAGGCACAAGGTGCCATGGAAGCTGCTAAAGAGGGAAACAGCACAAGGGCAGAATAAGAAGAGGGTGTTTGTGTGCCCTGAGCCAAGCTGCTTGCACCATGACCCTTGCCATGCCCTTGGGGACCTTGTGGGAATCAAGAAGCACTTCAGAAGGAAGCACAGCAATCACAAGCAGTGGGTGTGTGACAAGTGCTCCAAAGGGGTGGAGAGTTTCATAGAACACCAAGATGCATGCACTGTCCGGCAGCATCGCCCAGAGTTGCAAGCACTTCAAGCAGCATGCTCTTCTAGAACAGCTTCAAGCGCAAGTCCCTCTAGTGAGGCAAATTTTAGCATAGCCCCACCATTGCAAGGACTTCCAGTACTGCCAAAACCAGCTGAACAACCAGCAACAGCAGTCTTATTAATGTCAGAGATACACAATAACAAGTCCACCACCTCGCATAACTTAGAACTTCAGCTCTTGCCCTCCTCAATAAATTCTCAAGAAAAACATAATCCAAAGGAAAACTATGGCTTGAAACTTTCAATAGGCTCATGTAGAAACGACACAGGGAATAATGAACCAGCAGAGAGAGCATGTTCAGAAGCACATAGGAGCCCACCAGAAAGGAATAATAATAATGTGAGTGACTATTCCACATTGGAAGTGGCAAGGTTGAAGGAGTTTGCAGGAGAGGAGCTTAAGTTGGCCATGGCAGAAAAGGCTTATGCAGAAGAGGCTAGAAGAGAGGCCAAACGCCAAATTGAGATAGCTGAACATGAGTTTGAGAATGCCAAAAGGATAAGGAAACAAGCACAAGCTGAACTTGCAAAGGCTGAAGAGCTGAGAAAGCAGGCCATCAAGAAGATAAGTTCCACTGTTAAGGAAATAACATGCCACACTTGCAAGCAACAGTTTCAGTCTTCAATTGTTGGGGTTCCATCATCAGAAGAAACCTCCATTGTGATGAGTTACATGTCCTCAGCCACCACAGAAGGAGAAGCAGAATGA 1236 0.4636 MLDNNNSASNSGAPSSSDAAFALSENGVANNKRKRRPAGTPDPDAEVVSLSPTTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETAQGQNKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGVESFIEHQDACTVRQHRPELQALQAACSSRTASSASPSSEANFSIAPPLQGLPVLPKPAEQPATAVLLMSEIHNNKSTTSHNLELQLLPSSINSQEKHNPKENYGLKLSIGSCRNDTGNNEPAERACSEAHRSPPERNNNNVSDYSTLEVARLKEFAGEELKLAMAEKAYAEEARREAKRQIEIAEHEFENAKRIRKQAQAELAKAEELRKQAIKKISSTVKEITCHTCKQQFQSSIVGVPSSEETSIVMSYMSSATTEGEAE* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1165 411 MobiDBLite consensus disorder prediction 1 24 - -
Gso5g1165 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Gso5g1165 411 Coils Coil 309 371 - -
Gso5g1165 411 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Gso5g1165 411 Gene3D Classic Zinc Finger 39 106 - -
Gso5g1165 411 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 1 148 - -
Gso5g1165 411 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 149 411 - -
Gso5g1165 411 SMART c2h2final6 104 134 IPR013087 -
Gso5g1165 411 SMART c2h2final6 61 83 IPR013087 -
Gso5g1165 411 SUPERFAMILY beta-beta-alpha zinc fingers 58 84 IPR036236 -
Gso5g1165 411 PANTHER OS03G0310200 PROTEIN 1 148 IPR039288 GO:0009630
Gso5g1165 411 PANTHER OS03G0310200 PROTEIN 149 411 IPR039288 GO:0009630
Gso5g1165 411 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1165 Gso-Chr5 34908213 34911571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1165 25 411 C2H2 Transcription Factor Family AT2G01940 51.259 1.30e-129 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso5g1165 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1165 K25871 - gmx:100806138 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1165 5 34908213 34911571 Gso8g0769 8 7044481 7047606 GST