Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1164 ATGGAGAACAACCATGTTCAGTTTTTGCCTCTTCTCACCGTGACACTTCTTCTTGTGATCACTGTTTTGTTTCCTGTGACTGAGGGTGCAGCAGTTTCCTCCATCAAGACTGATGCACAGGCTCTTCTCATGTTCAAAAGGATGATTCAGAAGGATCCAAGTGGAGTTTTGTCAGGGTGGAAGCTGAATAGGAATCCATGCAGCTGGTATGGAGTCTCTTGCACCCTTGGAAGAGTTACTCAGCTTGATATTAGTGGGAGTAATGACCTTGCTGGGACTATATCTCTTGACCCTTTGTCTTCTATAGATATGTTATCTGTTCTGAAAATGTCATTGAATTCATTTTCTGTAAATTCTACCTCTTTGCTTAATCTCCCATATAGTTTGACACAGCTTGATCTATCCTTTGGTGGAGTCACAGGTCCTGTCCCTGAGAACCTGTTCTCCAAGTGTCCAAATCTTGTTGTTGTGAATCTTTCTTACAACAACTTGACAGGCCCTATTCCTGAAAATTTCTTTCAAAATTCTGATAAACTGCAGGTCCTTGACCTCTCTTACAACAACCTGTCAGGGCCAATTTTTGGCCTGAAAATGGAGTGCATTTCCTTGTTGCAACTTGATCTATCTGGAAACCGTTTATCAGACTCAATTCCACTCTCTTTGTCAAACTGCACCAGCCTTAAAATTTTGAATTTAGCCAACAATATGGTTTCTGGGGATATCCCCAAAGCTTTTGGTCAGCTAAACAAACTACAGACTTTGGATCTTTCCCACAACCAACTCAATGGCTGGATCCCTTCTGAATTTGGAAATGCATGTGCTTCCCTTTTGGAGCTCAAACTTTCTTTCAACAACATCTCAGGCTCAATCCCACCTAGTTTCTCTTCTTGCAGTTGGCTGCAACTTCTTGACATATCTAACAACAATATGTCAGGGCAGTTACCAGATGCAATCTTTCAGAACCTTGGATCATTACAGGAACTGAGGCTGGGAAATAATGCTATCACAGGTCAATTTCCATCTTCACTATCTTCCTGCAAAAAGTTGAAGATTGTGGATTTCAGCTCAAATAAAATTTATGGATCTATCCCCAGAGATTTATGTCCAGGAGCAGTCTCACTTGAGGAGCTGAGAATGCCAGACAATCTCATTACAGGAGAAATCCCAGCTGAACTGTCAAAGTGCTCAAAGCTGAAGACACTTGATTTTAGTCTGAACTATCTCAATGGTACAATTCCTGATGAGCTTGGAGAACTCGAAAATCTTGAGCAGCTAATAGCATGGTTCAATAGCTTGGAAGGAAGCATTCCACCAAAGTTGGGCCAGTGCAAGAATCTCAAGGATCTCATACTGAATAATAATCACCTCACAGGTGGAATTCCAATTGAGTTGTTCAATTGCAGCAATCTTGAATGGATATCACTGACAAGCAATGAACTCAGTTGGGAAATACCGCGCAAGTTTGGCCTCTTGACAAGGTTAGCAGTCCTGCAGCTTGGAAACAACAGCTTGACTGGGGAGATACCATCAGAGCTAGCAAATTGCAGAAGTTTGGTGTGGTTGGACTTGAACAGCAACAAGCTCACTGGAGAGATCCCTCCAAGACTTGGCAGGCAGCTAGGAGCAAAATCCTTGTTTGGGATCCTTTCAGGAAACACTTTGGTGTTTGTAAGAAATGTTGGAAACTCATGTAAAGGAGTTGGAGGTTTGCTAGAATTCTCTGGTATCCGACCTGAAAGACTCTTGCAGGTCCCAACATTGAGGACTTGTGACTTCGCAAGACTCTATTCTGGTCCTGTCCTCAGCCAGTTCACCAAGTACCAGACTCTGGAGTATCTTGATCTTTCCTATAACGAGCTTCGCGGAAAAATCCCAGATGAATTTGGAGATATGGTGGCTTTACAGGTTCTTGAATTATCTCACAATCAGCTATCTGGAGAAATCCCTTCATCACTTGGCCAGCTCAAAAATTTGGGTGTGTTTGATGCATCACACAATAGACTGCAGGGTCATATCCCAGACTCATTCTCAAACCTCTCATTCTTAGTGCAAATTGATCTATCTAACAATGAGTTAACAGGGCAGATTCCATCTAGGGGACAACTGAGTACACTTCCAGCTTCCCAGTATGCGAACAATCCAGGACTTTGTGGTGTACCATTGCCTGATTGCAAGAATGACAACAGCCAAACCACAACAAATCCAAGTGATGATGTTAGCAAAGGAGACCGTAAATCAGCAACTGCAACATGGGCAAACAGCATTGTCATGGGAATTCTCATCTCTGTTGCTTCAGTGTGTATCTTAATTGTGTGGGCAATTGCAATGCGCGCAAGGAGGAAGGAAGCCGAGGAAGTCAAGATGCTCAATAGCTTACAAGCATGCCATGCTGCTACAACATGGAAAATTGACAAAGAGAAAGAGCCCCTTAGCATTAATGTGGCAACATTTCAGAGGCAGCTGAGGAAGCTCAAGTTCTCACAGTTGATTGAAGCAACTAATGGATTCTCAGCAGCGAGCCTCATTGGGTGTGGTGGTTTTGGTGAAGTGTTCAAGGCCACACTCAAAGACGGTTCAAGTGTCGCCATAAAGAAGCTCATTCGACTGAGCTGCCAGGGCGATCGAGAATTCATGGCAGAGATGGAAACCTTAGGGAAGATCAAGCACAGAAATCTTGTCCCTTTGTTGGGGTACTGCAAAGTAGGGGAAGAGAGGCTCCTTGTGTATGAGTACATGGAGTATGGAAGCCTAGAAGAGATGCTTCATGGGAGAATCAAGACGCGTGATCGACGAATTTTGACATGGGAAGAAAGGAAGAAGATTGCAAGAGGTGCTGCTAAAGGACTTTGTTTCCTGCACCACAATTGCATCCCTCACATCATACACAGAGACATGAAATCAAGCAACGTGCTACTTGACAATGAAATGGAGTCCAGGGTCTCAGATTTTGGCATGGCAAGATTAATAAGTGCCCTTGACACACATCTTAGTGTGAGCACGCTAGCAGGAACACCTGGATATGTTCCTCCAGAGTACTACCAAAGTTTCAGGTGCACTGTCAAGGGAGATGTCTATTCATTTGGAGTTGTGATGTTGGAACTGCTTAGCGGGAAACGCCCGACTGATAAGGAGGACTTTGGTGACACCAACTTGGTGGGGTGGGCGAAGATAAAGGTCCGCGAAGGGAAGCAAATGGAAGTAATTGACAATGACTTGCTTTTGGCCACTCAAGGAACTGATGAAGCAGAAGCCAAAGAAGTGAAGGAGATGATAAGATATTTAGAGATTACTTTGCAGTGTGTTGATGACTTGCCTTCAAGAAGGCCAAACATGTTGCAGGTAGTGGCTATGCTGAGAGAGCTTATGCCTGGATCAACTGATGGAAGCAGCAACAGTGCTTGA 3402 0.438 MENNHVQFLPLLTVTLLLVITVLFPVTEGAAVSSIKTDAQALLMFKRMIQKDPSGVLSGWKLNRNPCSWYGVSCTLGRVTQLDISGSNDLAGTISLDPLSSIDMLSVLKMSLNSFSVNSTSLLNLPYSLTQLDLSFGGVTGPVPENLFSKCPNLVVVNLSYNNLTGPIPENFFQNSDKLQVLDLSYNNLSGPIFGLKMECISLLQLDLSGNRLSDSIPLSLSNCTSLKILNLANNMVSGDIPKAFGQLNKLQTLDLSHNQLNGWIPSEFGNACASLLELKLSFNNISGSIPPSFSSCSWLQLLDISNNNMSGQLPDAIFQNLGSLQELRLGNNAITGQFPSSLSSCKKLKIVDFSSNKIYGSIPRDLCPGAVSLEELRMPDNLITGEIPAELSKCSKLKTLDFSLNYLNGTIPDELGELENLEQLIAWFNSLEGSIPPKLGQCKNLKDLILNNNHLTGGIPIELFNCSNLEWISLTSNELSWEIPRKFGLLTRLAVLQLGNNSLTGEIPSELANCRSLVWLDLNSNKLTGEIPPRLGRQLGAKSLFGILSGNTLVFVRNVGNSCKGVGGLLEFSGIRPERLLQVPTLRTCDFARLYSGPVLSQFTKYQTLEYLDLSYNELRGKIPDEFGDMVALQVLELSHNQLSGEIPSSLGQLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSNNELTGQIPSRGQLSTLPASQYANNPGLCGVPLPDCKNDNSQTTTNPSDDVSKGDRKSATATWANSIVMGILISVASVCILIVWAIAMRARRKEAEEVKMLNSLQACHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAASLIGCGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEYMEYGSLEEMLHGRIKTRDRRILTWEERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDNEMESRVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTVKGDVYSFGVVMLELLSGKRPTDKEDFGDTNLVGWAKIKVREGKQMEVIDNDLLLATQGTDEAEAKEVKEMIRYLEITLQCVDDLPSRRPNMLQVVAMLRELMPGSTDGSSNSA* 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1164 1133 CDD STKc_IRAK 842 1121 - -
Gso5g1164 1133 Gene3D Ribonuclease Inhibitor 37 149 IPR032675 -
Gso5g1164 1133 SUPERFAMILY L domain-like 37 315 - -
Gso5g1164 1133 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Gso5g1164 1133 Gene3D Transferase(Phosphotransferase) domain 1 912 1130 - -
Gso5g1164 1133 ProSiteProfiles Leucine-rich repeat profile. 202 223 IPR001611 GO:0005515
Gso5g1164 1133 Pfam Protein tyrosine and serine/threonine kinase 840 1118 IPR001245 GO:0004672|GO:0006468
Gso5g1164 1133 ProSitePatterns Serine/Threonine protein kinases active-site signature. 960 972 IPR008271 GO:0004672|GO:0006468
Gso5g1164 1133 SUPERFAMILY RNI-like 241 535 - -
Gso5g1164 1133 Gene3D Ribonuclease Inhibitor 150 724 IPR032675 -
Gso5g1164 1133 PRINTS Leucine-rich repeat signature 179 192 - -
Gso5g1164 1133 PRINTS Leucine-rich repeat signature 248 261 - -
Gso5g1164 1133 Gene3D - 549 605 - -
Gso5g1164 1133 ProSiteProfiles Leucine-rich repeat profile. 250 271 IPR001611 GO:0005515
Gso5g1164 1133 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 24 1122 - -
Gso5g1164 1133 SMART LRR_typ_2 248 271 IPR003591 -
Gso5g1164 1133 SMART LRR_typ_2 444 467 IPR003591 -
Gso5g1164 1133 SMART LRR_typ_2 491 515 IPR003591 -
Gso5g1164 1133 SMART LRR_typ_2 516 539 IPR003591 -
Gso5g1164 1133 SMART LRR_typ_2 200 224 IPR003591 -
Gso5g1164 1133 SMART LRR_typ_2 419 443 IPR003591 -
Gso5g1164 1133 SMART LRR_typ_2 322 346 IPR003591 -
Gso5g1164 1133 SMART LRR_typ_2 151 175 IPR003591 -
Gso5g1164 1133 SMART LRR_typ_2 631 655 IPR003591 -
Gso5g1164 1133 MobiDBLite consensus disorder prediction 721 744 - -
Gso5g1164 1133 SUPERFAMILY L domain-like 573 721 - -
Gso5g1164 1133 Gene3D Phosphorylase Kinase; domain 1 796 911 - -
Gso5g1164 1133 ProSitePatterns Protein kinases ATP-binding region signature. 842 865 IPR017441 GO:0005524
Gso5g1164 1133 Pfam Brassinosteroid receptor island domain 546 605 IPR045381 -
Gso5g1164 1133 Pfam Leucine rich repeat 203 261 IPR001611 GO:0005515
Gso5g1164 1133 Pfam Leucine rich repeat 603 644 IPR001611 GO:0005515
Gso5g1164 1133 Pfam Leucine rich repeat 128 189 IPR001611 GO:0005515
Gso5g1164 1133 Pfam Leucine rich repeat 300 359 IPR001611 GO:0005515
Gso5g1164 1133 ProSiteProfiles Protein kinase domain profile. 836 1122 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1164 1133 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 24 1122 - -
Gso5g1164 1133 SUPERFAMILY Protein kinase-like (PK-like) 817 1118 IPR011009 -
Gso5g1164 1133 SMART serkin_6 836 1122 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1164 Gso-Chr5 34893421 34897254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1164 11 1121 Receptor kinase-like Gene Family AT1G55610 48.180 0.0 993
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gso5g1164 PK_Tyr_Ser-Thr 1.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1164 - - gmx:100305360 2212.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1164 5 34893421 34897254 Gso8g0768 8 7028466 7032297 GST