Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1155 ATGGTTACCCAACAACAGCCACAGCCACAGCTTCAGGTTCAGCCTCAGCAGTCGACACCACCCTCTTCACAAGATGAGGCCTTGAAGAGGAACACCGATTGTGTCTACTTCCTTGCATCTCCTTTGACATGCAAAAAGGGAAATGAATGCGAGTACCGCCACAGCGAGTATGCACGTGTTAATCCTAGGGACTGTCGGTATTGGTTGAGTGGCAATTGCTTGAATCCCAAATGTCCATTTCGTCATCCGCCTCTTGATGGCTTGTTAGGAACACAGGCAGCAGTGACTGGTGGACCATCTGTATCCCCATCACAGATTCCAACAGCATCTGCAACACATGCACCGTATAATTCCAGTAAACAAGCTGTACCTTGCTTTTTCTTCCAAAAAGGACTTTGCTTAAAAGGTGACAGATGTGCCTTCTTGCATGGACCACCCACTCCTACTTCTAGCACGGGTAATAAAGTAGCTGCTCAGGTTCCAGTGACTAGCCAAGGAGTTGAGAATCCATGTTTTAAGAAGCCTTTTGTCAGCAATGAAAAGTATACTCAGGAAAGGAAAACTTCCCAAGGAAATGTTGCAAAGTCAAGTGGAATTTCTGAAGCCAAACCTGCCTCAAAAATTGAAACTGCTCCTCAAAGAAATATGTTTGAATGGGAGAAGAAAGTGCCACCACCAGCTGTGGGATTTGATAATGAGGTTTCTAGATTTAAGACAACCTCTCCACCAGTGACCAATGGCCCTACTGTAGCCCGGCCAAACCGTCTGCATCAAGCTCGTGTGCCAGATGATCACAATTTCCAGAGTGGCAAGGACAGTGATGAGTTTCTCAGAGAATCATCTCCTGGGTTTGATGTTCTTGTAGCTGATGAACTTAGGAATTCTGATTACTACCACGGAGAAGATGAATTCAGTAAAGCAAGAGGTCAAGATGAAAGGAACTTAGACTCTTTGAATGAATATGATTTAGGACATTCTGGTGATTATAGTTTAGCAGCTGATATCGATCGTGAAAGATTCCGTGTGCCTCAAGGTTATGAGTCATATGATCACTTGCAGGAGCCGTATGCTTGGGAGCAGCATAGAAAGCCCTCAGCCCATGTAGACAGAAGGACTCGCCGCAGATCCAACAGTCCTGAAAATGCTGAGGTCTCAGATCTACGACATCATTTATCCAAGCGCAGGAAGGGCAATGGTTTGAAGTCTGTTGTCGGTCATGATTATGCCCATGAGGGCCATGGTGAGGAACAAAGTCGTCGGCCCTTCTCTCGGAAGGATTCACTTGAGTTACCTCTGAATGAGAGCTTCCTCGGTAACCGCTTCCGAGGTAGAATAAAACTTCCAGCAAATGGTGGTGCTGATCACCTAGAGAGGGAAGACAGGGGAAGATTTAGGAACAGATTGTCATCTGGAAGGTTGCCGGCCACTCACCATTTGTCACCTGGAGAGGGAAGGGTCCATGACAGAATAAGAGGAAGATTGCAAGATGATGAGAGGAGAAACTCCAAGGATCGATTGATGGGGAGAGAACTACCGGGTGATAGGAGTGATTTTGCTGGGCCAAAAAGTCTTTCTGAACTTAAAAATGGGAGGAACACTGAGAATAGGGAGCAACAATCACTGGGAAGGAGAAGAAGTTTAAGGGATGATCGCCCACAATCTGAAGATGATTTTCTGTTTGAAGGTCCAAAACCTCTTAGTGAAATTCTGAAGGAGAAGAGAGGTGCTGGAGCTGATGCAGACTCTGGGAATGGCAAATCATCTGACAATAAGAATCAAGAAGTTACCAATGGCCAGAATCCTACACCTGCTGCAAACACACAAAATGGAGTGCTGTCTGAGACCAAAGAAGATGTCAAGAATCTTCCACCAAATAATGAAGAATCATCCAAGCTTGAGGTCACTGATGCAGCTGGAGGAGACAATGATGGTGAATATGAGGAGGGAATGGTGTACGATGAAGCAGGTGAGGATCAGTATTATGAAGGTGATGATCAGAGAGATGCGGACTATGAGTATGAACAAGGTGAAGGTGATGAGGGATACTATGAGTACGAGCAAGGTGAAGAGGGTGAAAATCAAGAGGAAGATTACATGGAAGAAGAAGATGGGGATGATTTTGCTAAGAAGATTGGTGTCGTTCATTCGTAA 2151 0.4537 MVTQQQPQPQLQVQPQQSTPPSSQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCRYWLSGNCLNPKCPFRHPPLDGLLGTQAAVTGGPSVSPSQIPTASATHAPYNSSKQAVPCFFFQKGLCLKGDRCAFLHGPPTPTSSTGNKVAAQVPVTSQGVENPCFKKPFVSNEKYTQERKTSQGNVAKSSGISEAKPASKIETAPQRNMFEWEKKVPPPAVGFDNEVSRFKTTSPPVTNGPTVARPNRLHQARVPDDHNFQSGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFSKARGQDERNLDSLNEYDLGHSGDYSLAADIDRERFRVPQGYESYDHLQEPYAWEQHRKPSAHVDRRTRRRSNSPENAEVSDLRHHLSKRRKGNGLKSVVGHDYAHEGHGEEQSRRPFSRKDSLELPLNESFLGNRFRGRIKLPANGGADHLEREDRGRFRNRLSSGRLPATHHLSPGEGRVHDRIRGRLQDDERRNSKDRLMGRELPGDRSDFAGPKSLSELKNGRNTENREQQSLGRRRSLRDDRPQSEDDFLFEGPKPLSEILKEKRGAGADADSGNGKSSDNKNQEVTNGQNPTPAANTQNGVLSETKEDVKNLPPNNEESSKLEVTDAAGGDNDGEYEEGMVYDEAGEDQYYEGDDQRDADYEYEQGEGDEGYYEYEQGEEGENQEEDYMEEEDGDDFAKKIGVVHS* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1155 716 MobiDBLite consensus disorder prediction 481 516 - -
Gso5g1155 716 MobiDBLite consensus disorder prediction 257 278 - -
Gso5g1155 716 MobiDBLite consensus disorder prediction 357 390 - -
Gso5g1155 716 MobiDBLite consensus disorder prediction 406 427 - -
Gso5g1155 716 MobiDBLite consensus disorder prediction 678 703 - -
Gso5g1155 716 Gene3D - 20 85 - -
Gso5g1155 716 Gene3D - 110 190 - -
Gso5g1155 716 ProSiteProfiles Zinc finger C3H1-type profile. 28 57 IPR000571 GO:0046872
Gso5g1155 716 MobiDBLite consensus disorder prediction 529 579 - -
Gso5g1155 716 MobiDBLite consensus disorder prediction 181 214 - -
Gso5g1155 716 ProSiteProfiles Zinc finger C3H1-type profile. 59 85 IPR000571 GO:0046872
Gso5g1155 716 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 13 716 - -
Gso5g1155 716 Pfam RNA-binding, Nab2-type zinc finger 124 144 - -
Gso5g1155 716 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 13 716 - -
Gso5g1155 716 MobiDBLite consensus disorder prediction 583 615 - -
Gso5g1155 716 MobiDBLite consensus disorder prediction 1 26 - -
Gso5g1155 716 MobiDBLite consensus disorder prediction 678 716 - -
Gso5g1155 716 MobiDBLite consensus disorder prediction 236 252 - -
Gso5g1155 716 MobiDBLite consensus disorder prediction 445 647 - -
Gso5g1155 716 SMART c3hfinal6 119 145 IPR000571 GO:0046872
Gso5g1155 716 SMART c3hfinal6 61 84 IPR000571 GO:0046872
Gso5g1155 716 SMART c3hfinal6 29 56 IPR000571 GO:0046872
Gso5g1155 716 MobiDBLite consensus disorder prediction 182 199 - -
Gso5g1155 716 MobiDBLite consensus disorder prediction 357 427 - -
Gso5g1155 716 MobiDBLite consensus disorder prediction 236 278 - -
Gso5g1155 716 Pfam Zinc-finger containing family 29 83 IPR041686 -
Gso5g1155 716 MobiDBLite consensus disorder prediction 451 467 - -
Gso5g1155 716 ProSiteProfiles Zinc finger C3H1-type profile. 119 146 IPR000571 GO:0046872
Gso5g1155 716 SUPERFAMILY CCCH zinc finger 120 144 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1155 Gso-Chr5 34747278 34751609 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso5g1155 zf-CCCH_3 6e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1155 - - gmx:102669253 1374.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1155 5 34747278 34751609 Gso8g0756 8 6895901 6900001 GST