Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1147 ATGCCACAAATGATGAAGTTTTCAACTTTTGCAATTGTGTTCCTTTTGTGTTTTTCTTCTATGCTACTAGTCCTTGGTCAGGTCAACTCAGACAGTGAGAGTACTTTGAGAGTGTTGTTGGAAGTGAAGAAGTCTTTTGTGGAAGACCCACAAAATGTTCTGGGTGATTGGTCAGAGGATAACACAGACTATTGCAGTTGGAGAGGGGTATCATGTGAATTGAACTCAAACTCAAACACTTTAGATAGTGACTCGGTGCAAGTAGTGGTGGCTCTCAACCTTTCTGACTCGTCACTCACCGGGTCAATATCACCTTCACTCGGTCGTTTGCAAAACCTGCTCCACCTTGATCTCTCCTCCAACAGCCTCATGGGTCCAATTCCACCTAATCTCTCCAACCTCACTTCATTGGAATCTTTGCTTCTCTTCTCCAACCAACTCACGGGTCACATTCCAACTGAGTTCGGCTCGCTTACGAGTCTCCGAGTCATGCGACTCGGTGACAATGCACTAACAGGAACTATCCCTGCGTCTCTCGGGAACCTAGTCAACCTAGTCAACCTTGGCTTGGCTTCATGTGGAATCACCGGGTCGATCCCGAGTCAACTCGGTCAACTCAGTCTCTTGGAGAATCTGATTCTGCAGGACAACGAGTTGATGGGTCCGATTCCGACCGAGTTGGGGAACTGCTCAAGCCTCACCGTCTTCACTGCAGCCAGCAACAAACTCAACGGCTCAATCCCGAGTGAACTGGGTCGACTCGGGAATCTGCAGATTCTTAACTTAGCCAACAACAGCTTATCATGGAAGATTCCGAGTCAACTCAGTAAAATGAGTCAACTCGTTTACATGAACTTCATGGGGAACCAGCTCGAGGGTGCTATTCCACCGTCTCTGGCTCAACTGGGTAATCTTCAAAATCTGGACTTGTCAATGAACAAGCTCAGTGGAGGAATCCCAGAGGAGTTAGGCAACATGGGCGACTTAGCTTACTTGGTTCTGTCTGGTAACAACCTTAATTGTGTCATACCAAGGACCATATGTTCCAATGCAACAAGTTTGGAGCACTTGATGTTGTCAGAAAGTGGACTTCATGGTGAGATTCCAGCTGAGTTGAGTCAGTGCCAGCAATTGAAGCAACTTGATTTGTCAAACAATGCACTCAATGGGTCCATACCTCTTGAGCTTTATGGGCTGCTCGGGTTAACTGACCTTTTGCTGAACAATAACACTTTGGTTGGTTCCATCTCTCCCTTCATAGGTAACCTCAGTGGCTTGCAGACACTTGCTTTGTTTCACAACAATTTGGAGGGTTCTCTGCCAAGAGAGATTGGAATGCTTGGTAAGTTGGAAATTTTGTATCTTTATGATAATCAATTGTCAGGGGCTATTCCTATGGAGATTGGTAACTGTTCTAGCTTGCAAATGGTTGATTTCTTTGGGAACCATTTCAGTGGGGAAATTCCCATCACTATTGGAAGGCTGAAAGAGTTGAACTTCCTTCACCTCAGACAGAATGAGCTTGTGGGTGAGATTCCATCCACCTTGGGTCATTGTCATAAGCTGAACATTCTGGATTTGGCTGACAATCAGCTCTCAGGTGCAATTCCTGAAACGTTTGAATTCCTCGAGGCGTTGCAACAGCTCATGCTCTACAACAATTCTCTTGAAGGTAACCTCCCTCACCAACTGATAAATGTAGCAAACTTGACCAGAGTGAATCTCTCAAAGAACAGATTGAATGGTAGTATTGCTGCATTGTGTAGCTCTCAATCATTTCTTTCTTTCGATGTTACCGACAATGAATTTGACGGTGAAATTCCTTCCCAAATGGGGAACTCACCCTCCCTTCAGAGGCTGAGATTGGGCAACAATAAATTCTCTGGTGAAATTCCAAGGACATTGGGAAAAATCCTTGAGCTGTCGTTGTTAGACCTCTCTGGAAATTCACTCACTGGACCAATACCAGCTGAGCTTTCTTTGTGCAACAAACTGGCTTATATTGATTTAAACAGTAATCTTCTTTTTGGACAAATACCATCATGGCTTGAAAATTTGCCTCAGTTGGGAGAGCTGAAGCTTTCCTCCAATAATTTTTCTGGGCCTCTTCCATTAGGCCTATTCAAATGTTCCAAATTGCTAGTTCTCTCTCTAAATGACAACTCTCTGAATGGAAGTCTCCCATCTAATATTGGTGATCTTGCATACCTTAATGTCCTCAGACTTGACCACAACAAGTTTTCTGGACCAATCCCTCCGGAGATAGGTAAGTTGAGCAAGCTTTATGAGCTCCGGCTCTCTAGAAATAGCTTCCATGGTGAGATGCCGGCTGAGATTGGAAAACTTCAAAATCTCCAAATCATTTTAGACCTCAGTTACAATAATCTCTCAGGTCAAATCCCACCTTCTGTTGGGACAATGTCAAAGTTAGAAGCACTTGATCTTTCCCACAATCAACTCACTGGAGAAGTCCCTCCACATGTTGGGGAAATGAGCAGCTTGGGAAAGCTTGATCTCTCTTACAACAACCTTCGAGGAAAATTAGATAAGCAGTTCTCGCGCTGGTCAGACGAGGCATTTGAAGGAAACCTACATCTTTGCGGAAGCCCTCTTGAGCGCTGCCGCCGTGATGATGCTTCTGGGAGTGCAGGCCTAAATGAGTCATCAGTAGCGATAATATCTTCCCTTTCAACTTTAGCTGTAATTGCTCTTTTGATAGTTGCAGTGAGAATCTTCTCCAAAAACAAGCAAGAATTTTGCAGGAAAGGCAGTGAGGTGAATTATGTTTACTCTTCCTCTTCATCACAAGCACAGAGAAGACCATTGTTCCAACTAAATGCTGCTGGAAAGAGGGATTTCAGATGGGAACACATCATGGATGCCACGAACAATCTTAGTGATGACTTCATGATTGGTTCAGGAGGTTCAGGCAAAATCTACAAAGCTGAATTGGCCACTGGAGAGACGGTGGCTGTCAAGAAGATTTCATCGAAAGATGAATTTCTGTTGAACAAAAGCTTCTTAAGAGAAGTCAAGACCCTAGGGAGGATTAGGCATAGACATCTGGTGAAGCTAATAGGATATTGTACCAATAGAAACAAAGAAGCAGGTTGGAATCTGCTGATATATGAGTACATGGAGAATGGGAGTGTATGGGATTGGCTTCATGGGAAACCAGCCAAGGCAAGCAAAGTAAAGAGGAGAATTGATTGGGAGACAAGGTTCAAAATTGCTGTGGGATTAGCTCAAGGAGTGGAATACCTCCATCACGATTGTGTCCCGAGGATCATTCATAGGGACATCAAATCCAGCAATGTATTGCTAGATTCCAAAATGGAAGCACACTTGGGAGATTTTGGACTGGCAAAAGCACTAACTGAGAATTATGACTCCAATACTGAGTCCAATTCTTGGTTTGCTGGCTCTTATGGCTACATAGCACCAGAGTATGCATACTCCCTACAGGCAACAGAAAAAAGTGATGTTTACAGCATGGGAATATTGCTTATGGAACTTGTTAGTGGTAAAATGCCAACAAGTGAATTTTTTGGAGCTGAGATGGACATGGTGAGATGGGTAGAGATGCACATGGATATGCATGGCTCTGGACGTGAGGAGTTGATAGATTCTGAGCTGAAACCTCTTTTACCTGGCGAAGAGTTTGCTGCATTCCAAGTGCTTGAGATAGCCTTACAGTGCACGAAAACTACACCACTAGAGAGGCCATCTTCAAGGAAAGCATGTGATCTTCTCCTCCATGTATTCAACAACAGGATGGTGAAGTTTGAGAAGATGAATTTGGATCATTACAAATGA 3816 0.4395 MPQMMKFSTFAIVFLLCFSSMLLVLGQVNSDSESTLRVLLEVKKSFVEDPQNVLGDWSEDNTDYCSWRGVSCELNSNSNTLDSDSVQVVVALNLSDSSLTGSISPSLGRLQNLLHLDLSSNSLMGPIPPNLSNLTSLESLLLFSNQLTGHIPTEFGSLTSLRVMRLGDNALTGTIPASLGNLVNLVNLGLASCGITGSIPSQLGQLSLLENLILQDNELMGPIPTELGNCSSLTVFTAASNKLNGSIPSELGRLGNLQILNLANNSLSWKIPSQLSKMSQLVYMNFMGNQLEGAIPPSLAQLGNLQNLDLSMNKLSGGIPEELGNMGDLAYLVLSGNNLNCVIPRTICSNATSLEHLMLSESGLHGEIPAELSQCQQLKQLDLSNNALNGSIPLELYGLLGLTDLLLNNNTLVGSISPFIGNLSGLQTLALFHNNLEGSLPREIGMLGKLEILYLYDNQLSGAIPMEIGNCSSLQMVDFFGNHFSGEIPITIGRLKELNFLHLRQNELVGEIPSTLGHCHKLNILDLADNQLSGAIPETFEFLEALQQLMLYNNSLEGNLPHQLINVANLTRVNLSKNRLNGSIAALCSSQSFLSFDVTDNEFDGEIPSQMGNSPSLQRLRLGNNKFSGEIPRTLGKILELSLLDLSGNSLTGPIPAELSLCNKLAYIDLNSNLLFGQIPSWLENLPQLGELKLSSNNFSGPLPLGLFKCSKLLVLSLNDNSLNGSLPSNIGDLAYLNVLRLDHNKFSGPIPPEIGKLSKLYELRLSRNSFHGEMPAEIGKLQNLQIILDLSYNNLSGQIPPSVGTMSKLEALDLSHNQLTGEVPPHVGEMSSLGKLDLSYNNLRGKLDKQFSRWSDEAFEGNLHLCGSPLERCRRDDASGSAGLNESSVAIISSLSTLAVIALLIVAVRIFSKNKQEFCRKGSEVNYVYSSSSSQAQRRPLFQLNAAGKRDFRWEHIMDATNNLSDDFMIGSGGSGKIYKAELATGETVAVKKISSKDEFLLNKSFLREVKTLGRIRHRHLVKLIGYCTNRNKEAGWNLLIYEYMENGSVWDWLHGKPAKASKVKRRIDWETRFKIAVGLAQGVEYLHHDCVPRIIHRDIKSSNVLLDSKMEAHLGDFGLAKALTENYDSNTESNSWFAGSYGYIAPEYAYSLQATEKSDVYSMGILLMELVSGKMPTSEFFGAEMDMVRWVEMHMDMHGSGREELIDSELKPLLPGEEFAAFQVLEIALQCTKTTPLERPSSRKACDLLLHVFNNRMVKFEKMNLDHYK* 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1147 1271 Pfam Leucine rich repeat 521 580 IPR001611 GO:0005515
Gso5g1147 1271 Pfam Leucine rich repeat 760 820 IPR001611 GO:0005515
Gso5g1147 1271 Gene3D Ribonuclease Inhibitor 242 401 IPR032675 -
Gso5g1147 1271 Gene3D Ribonuclease Inhibitor 542 878 IPR032675 -
Gso5g1147 1271 SUPERFAMILY RNI-like 295 635 - -
Gso5g1147 1271 SUPERFAMILY L domain-like 615 872 - -
Gso5g1147 1271 ProSitePatterns Protein kinases ATP-binding region signature. 971 994 IPR017441 GO:0005524
Gso5g1147 1271 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1096 1108 IPR008271 GO:0004672|GO:0006468
Gso5g1147 1271 SUPERFAMILY L domain-like 36 345 - -
Gso5g1147 1271 Gene3D Phosphorylase Kinase; domain 1 925 1045 - -
Gso5g1147 1271 ProSiteProfiles Protein kinase domain profile. 965 1256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1147 1271 Pfam Leucine rich repeat N-terminal domain 37 72 IPR013210 -
Gso5g1147 1271 PRINTS Leucine-rich repeat signature 378 391 - -
Gso5g1147 1271 PRINTS Leucine-rich repeat signature 807 820 - -
Gso5g1147 1271 SMART serkin_6 965 1256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1147 1271 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 6 1268 - -
Gso5g1147 1271 SUPERFAMILY Protein kinase-like (PK-like) 949 1251 IPR011009 -
Gso5g1147 1271 Gene3D Ribonuclease Inhibitor 472 541 IPR032675 -
Gso5g1147 1271 Gene3D Ribonuclease Inhibitor 402 471 IPR032675 -
Gso5g1147 1271 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 6 1268 - -
Gso5g1147 1271 Gene3D Ribonuclease Inhibitor 32 241 IPR032675 -
Gso5g1147 1271 Gene3D Transferase(Phosphotransferase) domain 1 1046 1268 - -
Gso5g1147 1271 Pfam Protein kinase domain 970 1248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1147 1271 SMART LRR_typ_2 447 471 IPR003591 -
Gso5g1147 1271 SMART LRR_typ_2 110 133 IPR003591 -
Gso5g1147 1271 SMART LRR_typ_2 375 399 IPR003591 -
Gso5g1147 1271 SMART LRR_typ_2 134 157 IPR003591 -
Gso5g1147 1271 SMART LRR_typ_2 831 862 IPR003591 -
Gso5g1147 1271 SMART LRR_typ_2 495 519 IPR003591 -
Gso5g1147 1271 SMART LRR_typ_2 423 446 IPR003591 -
Gso5g1147 1271 SMART LRR_typ_2 158 182 IPR003591 -
Gso5g1147 1271 SMART LRR_typ_2 302 326 IPR003591 -
Gso5g1147 1271 SMART LRR_typ_2 807 829 IPR003591 -
Gso5g1147 1271 SMART LRR_typ_2 254 278 IPR003591 -
Gso5g1147 1271 SMART LRR_typ_2 543 567 IPR003591 -
Gso5g1147 1271 SMART LRR_typ_2 686 710 IPR003591 -
Gso5g1147 1271 SMART LRR_typ_2 758 782 IPR003591 -
Gso5g1147 1271 SMART LRR_typ_2 206 230 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1147 Gso-Chr5 34664147 34669039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1147 13 752 Receptor kinase-like Gene Family AT1G17750 34.718 2.00e-98 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso5g1147 Pkinase 3.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1147 - - gmx:100801889 2409.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1147 5 34664147 34669039 Gso8g0747 8 6839452 6844163 GST