Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1143 ATGCATGAGCAAACCGGTTGCTTTGATCCCAACACAATGGGAGAAAGTATACCCTTTCTAAAGGATAACTTTCCTCAAACTCTACCTCCATCACCTATAGTTGTAGGAAACACCACAAACAGCAACAATAATAGTCTTGAACAGAATCTCAGGCTTTCTGTGGAGGAGCTCTCCTATAACCATCACTACCCACAACACCAAGAAGATCATGTCTCCACCTATGTAAGTGGAGTAACTGCCACATCTATTGAAATCCCACATCCACAACATCTAGGTTTGAACATGGGAAACTCCTACATCAACAACAACAACAACATGGATAACCATTTGGTGCAAGAGGTCATTGATGCCTATCCCTATCAGCTGTCCACTTGGGACCCTGCTACTGTTCAGGAATTACAAGACATAGCCTATGCTAATCACACAGAACAACAACAACAACAACAACAAAATGAACAACAATTTCAGCAAATTGAGACTCAAAACTGCAGCCAAAGTTACAACAACCCTTCTTCCATACTAGACCCTCCTTACCCTTCACCAGATCTCCTAAACCTTCTCCACATGCCAAGATGCTCAGCCTCATCTTTGCTCACCAATCCCTCCATTTGCCTCACAAACCCAACTCAGAACACACCAAACTTTCAGAATCCAATGGCCTTTCTTGGAGACCTTACAATAGGATCAGAAAACACAAGTGCATCCTCAGTTTTGTATGATCCTCTATTCCATCTGAACCTGCCTCCACAGCCTCCAGCACTCAGAGAGCTGTTTCAGTCTCTCCCCCGCGGCTATAGCTTGCCAACCAACTCAAGGAATGGCTCACTCTTTGCTGGAGGGGATGAGATGGAGGGTGATGGGAGCCAGCTTGACATGGGAGTGCTGGAATTCAACAGGGTCACACCTTCTGTAGGCAAAGGAAGGGGAGGCAAAGCTACCAAACACTTTGCAACTGAGAAACAAAGAAGAGAACAACTCAATGGAAAATACAAAATCTTGAGGAATCTCATCCCAAGCCCCACAAAGATTGATAGAGCATCTGTGGTGGGGGATGCCATTGACTATATAAGAGAGCTGATTAGAACTGTCAATGAGCTCAAACTACTGGTGGAGAAGAAAAGATACGCTAAGGAGAGGTACAAGAGGCCAAAAACAGAAGATGCTGCTGAGAGCTGCAACATAAAGCCTTTTGGTGATCCAGATGGGGGCATAAGGACCTCATGGCTCCAGAGGAAATCCAAAGACAGCGAGGTTGATGTCCGGATCATCGACGATGATGTCACAATCAAACTCTTCCAGAGGAAGAAGATTAACTGCCTGCTGTTTGTCTCCAAGGTTCTGGATGAACTTCAGTTGGAGCTTCACCATGTTGCAGGTGGACATGTTGGTGAATATTGCAGTTTCTTGTTCAATAGCAAGATAATGGAAGGTTCTTCAGTCTATGCAAGTGCCATAGCCAACAGGGTGATTGATGTTCTGGACAGTCAGTACACAGCAGCAGTTCCACATACAAACAGCTATTAG 1524 0.4488 MHEQTGCFDPNTMGESIPFLKDNFPQTLPPSPIVVGNTTNSNNNSLEQNLRLSVEELSYNHHYPQHQEDHVSTYVSGVTATSIEIPHPQHLGLNMGNSYINNNNNMDNHLVQEVIDAYPYQLSTWDPATVQELQDIAYANHTEQQQQQQQNEQQFQQIETQNCSQSYNNPSSILDPPYPSPDLLNLLHMPRCSASSLLTNPSICLTNPTQNTPNFQNPMAFLGDLTIGSENTSASSVLYDPLFHLNLPPQPPALRELFQSLPRGYSLPTNSRNGSLFAGGDEMEGDGSQLDMGVLEFNRVTPSVGKGRGGKATKHFATEKQRREQLNGKYKILRNLIPSPTKIDRASVVGDAIDYIRELIRTVNELKLLVEKKRYAKERYKRPKTEDAAESCNIKPFGDPDGGIRTSWLQRKSKDSEVDVRIIDDDVTIKLFQRKKINCLLFVSKVLDELQLELHHVAGGHVGEYCSFLFNSKIMEGSSVYASAIANRVIDVLDSQYTAAVPHTNSY* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1143 507 PANTHER TRANSCRIPTION FACTOR BHLH91 1 506 - -
Gso5g1143 507 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 308 372 IPR036638 GO:0046983
Gso5g1143 507 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 310 359 IPR011598 GO:0046983
Gso5g1143 507 PANTHER TRANSCRIPTION FACTOR BHLH91 1 506 IPR045895 GO:0006355|GO:0048658
Gso5g1143 507 Gene3D - 308 383 IPR036638 GO:0046983
Gso5g1143 507 Pfam Helix-loop-helix DNA-binding domain 313 359 IPR011598 GO:0046983
Gso5g1143 507 CDD bHLH_AtMYC1_like 315 381 IPR045896 -
Gso5g1143 507 MobiDBLite consensus disorder prediction 141 179 - -
Gso5g1143 507 SMART finulus 316 365 IPR011598 GO:0046983
Gso5g1143 507 MobiDBLite consensus disorder prediction 141 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1143 Gso-Chr5 34640857 34643856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1143 1 507 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G06170 39.080 3.25e-88 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso5g1143 HLH 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1143 - - gmx:100801349 952.199