Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1136 ATGTTTGCAGGGAAAGGGGCTGTTTGGTTCTCCAGAGCGGTGGCGTTGGCAGCAATCGCGGTGGTAGCTTGCGTTGGGCTTACACAGGCCCAACCCGAGGCCAGGTTCAACTGCAACAGCGCGAACATCCCCACGTGTCGCGCGCTCATAAGCTACTCTCACCCGAACACCACCACCCTCGGCGACATCCAAAAGCTCTTCAACGTGAAACACATCCTCGACATCGTGGGAGCGAACAACCTCCCAAGCAACGCCACAAAAACATACGCGGTGGGCCCCAACGAGGTTGTGAAGGTCCCTTTCCCGTGCAGGTGCAGCAACAACACGGGACTCTCGGACCGTGTTCCGCTGTACAGGATCAAGAAGGGGGACACGCTGTACGGCATCGCGACGACGACGTTCGCGGGTCTGATGAAGTGGCCGCAGATCCAGGTGGCCAATAACATAGCCGACGCGAATAATATCACCACCGGGGACATGCTTTATATTCCGCTGCCGTGTAGCTGCGACGAGGTGGGTGGGAAGAGTGTGGTGCACTATGCGCATCTTGTGGCGCCGCAGAGCACCGTGGAGGGGATTGCGGAGGAGTTTGGTACCACTCAGCAGATACTGCTCAACCTTAATGGGATTTCTGACCCCAAAAATCTTCAGGCAGGGCAGATTCTCGATGTTCCCCTCCAAGCTTGTTCCTCGAATGTGAAAAATGATTCATTGGACTATCCCTTGCTTGTCCCAAATGCTACTTACGCCTATACTGCCCATGAATGCGTCAAATGCAAGTGTGACTCCAGTAACAATTTCATATTACAATGTGAGCCATCCCAACTCAAACCAACCAACTGGTCTGTTTGCCCCTCTATGGAATGCTCAGCCAACGTCTTGATTGGCAAAACCATTTCCTCAGATTCCTGCAATCGCACAACCTGCGCCTATACTGGTTATAGATTCCACAATATCTCTGCAGAAGCTGTAACTGAGAACACTTGTGCTGTGCCGCCGACTCCGAGTGGTTCAGGAGGATCAACTGGTTCTGATTCAGGAGCGTCAAGGACCACCTTGCAAGGCTTGTTTTGGAGTAATCTTTTCATTGTCATTCACTTTGTCCTCTTTCTTGTCTATGTTTTGTAG 1128 0.523 MFAGKGAVWFSRAVALAAIAVVACVGLTQAQPEARFNCNSANIPTCRALISYSHPNTTTLGDIQKLFNVKHILDIVGANNLPSNATKTYAVGPNEVVKVPFPCRCSNNTGLSDRVPLYRIKKGDTLYGIATTTFAGLMKWPQIQVANNIADANNITTGDMLYIPLPCSCDEVGGKSVVHYAHLVAPQSTVEGIAEEFGTTQQILLNLNGISDPKNLQAGQILDVPLQACSSNVKNDSLDYPLLVPNATYAYTAHECVKCKCDSSNNFILQCEPSQLKPTNWSVCPSMECSANVLIGKTISSDSCNRTTCAYTGYRFHNISAEAVTENTCAVPPTPSGSGGSTGSDSGASRTTLQGLFWSNLFIVIHFVLFLVYVL* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1136 375 CDD LysM 182 224 IPR018392 -
Gso5g1136 375 Gene3D LysM domain 117 170 IPR036779 -
Gso5g1136 375 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 28 325 - -
Gso5g1136 375 SMART LysM_2 181 225 IPR018392 -
Gso5g1136 375 SMART LysM_2 117 164 IPR018392 -
Gso5g1136 375 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 28 325 - -
Gso5g1136 375 CDD LysM 118 163 IPR018392 -
Gso5g1136 375 Pfam LysM domain 118 164 IPR018392 -
Gso5g1136 375 Pfam LysM domain 185 225 IPR018392 -
Gso5g1136 375 Gene3D LysM domain 171 238 IPR036779 -
Gso5g1136 375 ProSiteProfiles LysM domain profile. 180 224 IPR018392 -
Gso5g1136 375 SUPERFAMILY LysM domain 117 165 IPR036779 -
Gso5g1136 375 ProSiteProfiles LysM domain profile. 116 163 IPR018392 -
Gso5g1136 375 SUPERFAMILY LysM domain 180 225 IPR036779 -
Gso5g1136 375 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1136 Gso-Chr5 34589257 34592484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1136 30 339 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 45.367 1.61e-83 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1136 - - gmx:100804190 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1136 5 34589257 34592484 Gso8g0730 8 6728971 6730425 GST