Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1132 ATGACGATGGAGATGAATATGCTGGCTTCTTCGTTCACTGGTTATGCAAAACCCTTTGCAAGTGTAAACCCTTCTCTTCTTCCCTTCAGGGCTTCTTCTCTGCGCCATGACTACCCTCTTGCAAGCAAAATTGTTGTTAAAAATTTACCATATTCTACCGGTGAGACTACTTTGCAGAAGGAATTTTCAAATTTTGGCAAGATAGCTGAAGGTAAATTGGTTAAAGATATGAACACAAAAAGATCTAAGGGTATTGCTTTCATTCAATATACATGTCAAGATGATGCCATGCTTGCACTAGAAACCATGGATCAGAAGGATTTTTATGGTCGAACAATTGGCGTGGAAATTGCAAGACTGGGTTGGGATGATTTTGGTGCATCCCCAAGGGCCTCAGGACCCCCAAAGAAGTGGCATTTACCTGAGCAAGGGGAAGTGGTAGATTGCTGGTACTGA 456 0.4211 MTMEMNMLASSFTGYAKPFASVNPSLLPFRASSLRHDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEGKLVKDMNTKRSKGIAFIQYTCQDDAMLALETMDQKDFYGRTIGVEIARLGWDDFGASPRASGPPKKWHLPEQGEVVDCWY* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1132 151 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Gso5g1132 151 SUPERFAMILY RNA-binding domain, RBD 27 122 IPR035979 GO:0003676
Gso5g1132 151 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 23 144 - -
Gso5g1132 151 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 23 144 - -
Gso5g1132 151 SMART rrm1_1 43 116 IPR000504 GO:0003723
Gso5g1132 151 Gene3D - 31 144 IPR012677 -
Gso5g1132 151 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 113 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1132 Gso-Chr5 34562395 34565897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1132 42 123 Eukaryotic Initiation Factors Gene Family AT2G36660 35.366 3.23e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1132 - K13195 gmx:100802603 313.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1132 5 34562395 34565897 Gso8g0726 8 6705478 6708648 GST