Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1110 ATGGCCGACGATCCAATGCCCACGCGCTGGTCTTTCCAGGACTTCAAATTGTATTATGATGCTAAGTTTGGTAGGAAGAAAGTCGCGGAGAATGGAGATACTGCTACTGATAAAGCGGTCAGCAATGGAAATTCAGTGACAGTGACCATTGTGTCCAATGGCAACAAAAGGGCATCGGAAATGGCTGTTTATGAGCAGTTTCGAGGCGAGGGGCTGAATCAGATTCACACAAATGGCTTTGTGCCGACCATTGTGGATGAAAGGCCGCAGAAGTCTTTGCTTCCACCCTTTGAATCTGCAGAAATGCGAGCTTTAGCAGAGAGCCTAAGTAGGGATATCATTCGTGGAAGTCCAGATGTGAAGTGGGAAAGCATCAAGGGGTTAGAGAATGCCAAACGTTTATTAAAAGAGGCTGTTGTGATGCCGATTAAGTATCCCAAGTACTTCACTGGTCTGTTATCACCATGGAAGGGCATCCTCCTTTTTGGCCCACCGGGCACAGGAAAGACAATGCTTGCAAAGGCAGTTGCGACAGAGTGCAAGACTACTTTTTTTAATATTTCAGCCTCATCTGTAGTCAGCAAATGGCGAGGTGATTCAGAGAAGTTAGTGAAAGTGTTATTTGAACTTGCAAGGCATCATGCACCCTCAACAATATTTCTTGATGAAATTGATGCAATCATTAGTCAACGTGGTGAAGCTCGCAGTGAACATGAAGCAAGTAGACGGTTGAAAACTGAGCTTCTCATTCAGATGGATGGTTTGACAAAGACAGATGAACTGGTTTTTGTTTTGGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGTATCCTTGTACCACTTCCAGAACCAGTAGCAAGAAGAGCAATGTTCGAGGAACTCCTTCCTCAACAGCCTGATGAGGAACCGATCCCCTATGATATACTGGTGGACAAGACAGAAGGATATTCCGGATCAGATATCCGATTACTCTGTAAAGAGACAGCAATGCAACCCTTAAGACGCCTAATGTCGCAACTTGAGCAGAGCCAGGATGTGGTGCCTGAAGAAGAGTTGCCAAAAGTTGGGCCAATCAAATCTGAAGATATAGAGACAGCTTTAAGAAACACGAGGCCATCTGCTCATCTCCATGCCCACAAATATGACAAGTTCAATGCTGATTATGGTAGTCAAATACTACAATGA 1212 0.4513 MADDPMPTRWSFQDFKLYYDAKFGRKKVAENGDTATDKAVSNGNSVTVTIVSNGNKRASEMAVYEQFRGEGLNQIHTNGFVPTIVDERPQKSLLPPFESAEMRALAESLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPVARRAMFEELLPQQPDEEPIPYDILVDKTEGYSGSDIRLLCKETAMQPLRRLMSQLEQSQDVVPEEELPKVGPIKSEDIETALRNTRPSAHLHAHKYDKFNADYGSQILQ* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1110 403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 384 IPR027417 -
Gso5g1110 403 Gene3D - 118 393 IPR027417 -
Gso5g1110 403 Gene3D - 291 379 - -
Gso5g1110 403 CDD AAA 126 290 - -
Gso5g1110 403 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A-LIKE 2 ISOFORM X1 9 401 - -
Gso5g1110 403 Pfam AAA+ lid domain 318 352 IPR041569 -
Gso5g1110 403 PANTHER AAA DOMAIN-CONTAINING 9 401 - -
Gso5g1110 403 Pfam ATPase family associated with various cellular activities (AAA) 159 289 IPR003959 GO:0005524|GO:0016887
Gso5g1110 403 SMART AAA_5 155 292 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1110 Gso-Chr5 34314577 34322623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1110 153 362 Calmodulin-binding Proteins AT3G56690 36.150 6.68e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1110 K07767 - gmx:100794098 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1110 5 34314577 34322623 Gso8g0706 8 6491215 6498342 GST