Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1102 ATGGATTTGAGCGAAGAAGTTAGGGCAGCTCACAAGCGAGAATTCTCCGATTTCTTGGATCAAGATGTCGGGAAGGGCATATACATGGACGAAATCAAAACCCTAATCAACCTCAAGCGCCACCGCCTTATCGTTAACATCTCCGATCTCCACAACTTCCGCGACTTGGGTAACAGGATTCTGAGGAGTCCAAGTGAGTACATGCAACCGTTCTGTGACGCTGTCACGGAGGCTACTCGTGCTATTGATCCTAAGTATTTGAAGGAAGGGGAACAAGTGCTTGTGGGATTTGAAGGCCCTTTTGTTTCTCGCCGTGTCACGCCCAGGGATCTTCTCTCTCAATTCATAGGTTCCATGGTCTGTGTTGAGGGCATTGTCACCAAATGTTCTCTTGTAAGGCCAAAGGTTGTTAAAAGTGTTCATTTTTGCCCCACCACCGGAAGCTTCACTTCTCGCGAATATCGTGATATTACATCTAATTTGGGTTTGCCCACAGGATCTGTTTACCCTACAAGGGATGAAAATGGGAACTTACTCGTGACTGAGTTTGGGCTGTGCAAATACAAAGATCATCAAACTTTGTCCATTCAAGAAGTTCCTGAGAATTCTGCTCCTGGTCAACTCCCAAGAACAGTGGATGTCATTGCAGAAGATGACCTTGTTGATTCTTGCAAGCCTGGAGATCGAGTGGCAATTGTGGGGATATATAAGGCTCTTGCAGGGAAAAGCAAAGGAAGTGTGAATGGAGTATTCAGGACTGTTCTCATAGCCAACAATGTTTCTCTTCTCAACAAAGAGGCTAATGCACCAATCTACAGTGCTGAAGATGTCAAAAGCATTAAAGAGATAGCTGCAAGAGATGATGCATTTGACCTGCTAAGTAATTCACTTGCACCATCTATATATGGGCATTCTTGGATAAAGAAAGCAGTGATTTTGTTGATGCTTAGTGGGGTGGAGAAGAACTTAAAGAATGGCACTCACTTGCGAGGTGACATTAACATGATGATGGTTGGCGATCCCTCTGTTGCCAAGTCTCAACTCTTGAGAGCAATTATGAACATTGCTCCCTTGGCCATATCAACCACAGGCCGGGGTTCTTCTGGGGTTGGTTTGACAGCTGCAGTTACTTCAGATCAAGAAACTGGAGAAAGAAGGCTTGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGTGTTGTCTGCATTGATGAATTTGACAAGATGAATGATCAAGATCGTGTTGCTATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCCAAAGCAGGTATCCATGCATCACTTAATGCCCGGTGCAGTGTGGTTGCAGCTGCAAATCCCATTTATGGAACTTATGATCGTTCATTGACTCCAACCAAAAATATTGGACTCCCAGACTCCTTGCTTTCTCGATTTGATCTACTGTTTATTGTGTTAGATCAAATGGATCCTGATATTGATCGTCGAATATCAGAGCATGTCCTTCGTATGCATCGATTTCGTTCTGCTGTTGATGGAGGTGAGGCAGTGCTTCATGGGAGCTCGAGATATGGAAGAGAAGATGAAGCTGATATGGACTCATCTGTTTTTGTCAAATATAACAGAATGTTACATGGGAAGAAAACTGGAAGGGGTCAAAAACGTGATACGCTTACAATTAAGTTTCTTAAAAAATTTATCCACTATGCTAAGCATAGGATTCAACCTGAACTTACTGATGAGGCATCTGAGAACATTGCCACGGCCTATGCTGAGCTCAGAAATGCAAGTTCAAATGCAAAGACTGGAGGAACACTTCCCATAACTGCCAGAACTTTAGAAACCATAATACGTCTGTCAACAGCTCATGCCAAATTGAAGTTGAGCAGAGAGGTTTCAAAGTCTGATGTTGAAGCTGCTTTGAAGGTTCTAAATTTTGCAATATATCACAAAGAACTAACAGAAATGGAGGAGCGTGAGCAAGAGAGGGAGAGAGAGCTGGACAGGAAGCGCAAGGCTGATCATGATGAAAATGATGGTCCTGATCATGGTCCTAAAGATAGAAGAGGTCCTAAAGATAAAAGACGGTCAACATCAACAGATGCCATGGATGTAGATGATAACTCAGCAGCTCAAGCTGCTGTTGGACTCACCCCTGAAAGAATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCTGGACCAAATAACTATTGTAAACTTAGTGAATGTTATCAACAGAGGGGAAGATCCACCATCTTACAGTGCTGCAGATGTACTACTCCTATTAGAGAGGTTGCAAGATGACAATAGAGTCATGATAACTGATGGAGTGGTGCATATGATATCATAA 2349 0.4312 MDLSEEVRAAHKREFSDFLDQDVGKGIYMDEIKTLINLKRHRLIVNISDLHNFRDLGNRILRSPSEYMQPFCDAVTEATRAIDPKYLKEGEQVLVGFEGPFVSRRVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGSFTSREYRDITSNLGLPTGSVYPTRDENGNLLVTEFGLCKYKDHQTLSIQEVPENSAPGQLPRTVDVIAEDDLVDSCKPGDRVAIVGIYKALAGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSAEDVKSIKEIAARDDAFDLLSNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISEHVLRMHRFRSAVDGGEAVLHGSSRYGREDEADMDSSVFVKYNRMLHGKKTGRGQKRDTLTIKFLKKFIHYAKHRIQPELTDEASENIATAYAELRNASSNAKTGGTLPITARTLETIIRLSTAHAKLKLSREVSKSDVEAALKVLNFAIYHKELTEMEEREQERERELDRKRKADHDENDGPDHGPKDRRGPKDKRRSTSTDAMDVDDNSAAQAAVGLTPERIEEFNSLFNQHMHANRLDQITIVNLVNVINRGEDPPSYSAADVLLLLERLQDDNRVMITDGVVHMIS* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1102 782 SMART AAA_5 331 484 IPR003593 -
Gso5g1102 782 MobiDBLite consensus disorder prediction 649 696 - -
Gso5g1102 782 Pfam MCM P-loop domain 276 499 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso5g1102 782 Gene3D - 109 239 IPR012340 -
Gso5g1102 782 SUPERFAMILY Nucleic acid-binding proteins 13 259 IPR012340 -
Gso5g1102 782 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 181 195 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Gso5g1102 782 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 207 219 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Gso5g1102 782 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 458 468 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Gso5g1102 782 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 491 501 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Gso5g1102 782 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 630 645 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Gso5g1102 782 SMART mcm 104 643 IPR031327 GO:0003677|GO:0005524|GO:0032508
Gso5g1102 782 ProSiteProfiles MCM family domain profile. 289 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso5g1102 782 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 3 774 IPR031327 GO:0003677|GO:0005524|GO:0032508
Gso5g1102 782 Pfam MCM N-terminal domain 12 83 IPR027925 -
Gso5g1102 782 Gene3D - 271 663 IPR027417 -
Gso5g1102 782 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 656 IPR027417 -
Gso5g1102 782 PRINTS Mini-chromosome maintenance (MCM) protein family signature 330 345 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso5g1102 782 PRINTS Mini-chromosome maintenance (MCM) protein family signature 390 404 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso5g1102 782 PRINTS Mini-chromosome maintenance (MCM) protein family signature 418 431 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso5g1102 782 PRINTS Mini-chromosome maintenance (MCM) protein family signature 442 454 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso5g1102 782 PRINTS Mini-chromosome maintenance (MCM) protein family signature 469 477 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso5g1102 782 ProSitePatterns MCM family signature. 398 406 IPR018525 GO:0003677|GO:0005524|GO:0006260
Gso5g1102 782 PANTHER DNA HELICASE 3 774 - -
Gso5g1102 782 CDD MCM3 292 641 - -
Gso5g1102 782 MobiDBLite consensus disorder prediction 649 704 - -
Gso5g1102 782 Pfam MCM AAA-lid domain 556 639 IPR041562 -
Gso5g1102 782 Gene3D - 3 99 - -
Gso5g1102 782 Gene3D - 135 189 - -
Gso5g1102 782 Coils Coil 644 670 - -
Gso5g1102 782 Pfam MCM OB domain 109 238 IPR033762 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1102 Gso-Chr5 34224099 34229874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1102 1 578 Core DNA Replication Machinery Family AT5G46280 81.724 0.0 969
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1102 K02541 - gmx:100791302 1502.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1102 5 34224099 34229874 Gso8g0698 8 6398471 6404348 GST