Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1100 ATGCAGACTCAGGAATATTTTCTCCCGGATAAGATGGTACTTCCTTTGGCAGATGAGGCCATTGATCCTCATATGCGTGCTCCACTTGCTTCTGCCTTTGATGCATATTTACCTCCAGGTGTGAGGCAGATAACACCCTTCGAAAGATTTAATGTGCAACCCTCTGAGGCTTGCCCCAAGAACTTTGTTATCTTTGATCAAACAGATCAACGAAGCAGGATCATGTTCCATCCTGCAATGACCTACAAATTTAACAGTCCTGGCTTAAATGTTCATGCTACTGGTTCTCAAGATTTTGAGAAAAATAAAGCCAATCAAATGGAAAGAGAAGTGTCATCTCCTTTTGAAGAAGATCCTAATGACATTGACGCATTGTTGAGCATAGGAGTGGATGAACTAGATGACTTTGACGAGGAAGAAGTCAGCACAGCAAGGACTCAAGAAAATTATGAAAGTTTATCCGATTCTTGCTCCAGTTATTGCTCAAAATCAAGGAAGAGGTCATCGTCATCTTCTGTACAGAAGTCGTCTGGGGCCGGGGGTTTCTGCCACAATGAAGGGAAGCACTGGGAGATGAAGAGGATGGTGAGGATGTTGAGAAAGATTGTGCCAGGTGGAGGTAATCAAATGGATTCTGTTGCTGTTTTAGATGAAGCTGTAAAATACCTCAAGTCTCTCAAAGTTGAGGTTGAACAATTCGGGGTTGAACCATGA 714 0.4272 MQTQEYFLPDKMVLPLADEAIDPHMRAPLASAFDAYLPPGVRQITPFERFNVQPSEACPKNFVIFDQTDQRSRIMFHPAMTYKFNSPGLNVHATGSQDFEKNKANQMEREVSSPFEEDPNDIDALLSIGVDELDDFDEEEVSTARTQENYESLSDSCSSYCSKSRKRSSSSSVQKSSGAGGFCHNEGKHWEMKRMVRMLRKIVPGGGNQMDSVAVLDEAVKYLKSLKVEVEQFGVEP* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1100 237 MobiDBLite consensus disorder prediction 161 181 - -
Gso5g1100 237 Gene3D - 190 234 IPR036638 GO:0046983
Gso5g1100 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 191 233 IPR036638 GO:0046983
Gso5g1100 237 PANTHER TRANSCRIPTION FACTOR BHLH144 1 236 - -
Gso5g1100 237 PANTHER TRANSCRIPTION FACTOR BHLH145 1 236 IPR037546 -
Gso5g1100 237 MobiDBLite consensus disorder prediction 161 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1100 Gso-Chr5 34209381 34212509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1100 16 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G29950 42.259 8.95e-41 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1100 - - gmx:100791998 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1100 5 34209381 34212509 Gso8g0696 8 6385837 6388961 GST