Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1097 ATGGCGAAAAAGGCAAAAGGGTCTCACTCTGCTTCTTCTGCCTCTGCATCTTCTTCTTCCGACAAACTAGTGCTGAGGATTAAATCAAATGAGGGGACCAAGAGATCAGTGCGGCAAACTAATTCAAGAAAGAAACTTAAAGCAAAGCAAAAGAAGAACAAACAAAAGTTTGATGCTATGAAACCCAGGAAACCTCCTACAGCTTTCTTCTACTTCTTGGAGGATTTTCGTAAAGAATTTCAAGAGCAGAATCCAGATGTAAAGTCAATGCGTGATATTGGCAAGGCATGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTACAATACTATGATATAGCAACAAAAAAACGTGAAGAATTTGATAGCGCAATGGCAGAATTTAACAAGAAAATGGAAAATGGCGAGTTTGACGAAACTGATGATGAATCAGAGTTTGATGAGTAA 453 0.3863 MAKKAKGSHSASSASASSSSDKLVLRIKSNEGTKRSVRQTNSRKKLKAKQKKNKQKFDAMKPRKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATKKREEFDSAMAEFNKKMENGEFDETDDESEFDE* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1097 150 Gene3D High mobility group box domain 57 146 IPR036910 -
Gso5g1097 150 PANTHER HIGH MOBILITY GROUP B PROTEIN 14 1 149 - -
Gso5g1097 150 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 1 149 - -
Gso5g1097 150 MobiDBLite consensus disorder prediction 1 62 - -
Gso5g1097 150 CDD HMGB-UBF_HMG-box 62 128 - -
Gso5g1097 150 Pfam HMG (high mobility group) box 62 131 IPR009071 -
Gso5g1097 150 MobiDBLite consensus disorder prediction 8 26 - -
Gso5g1097 150 SUPERFAMILY HMG-box 49 138 IPR036910 -
Gso5g1097 150 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 62 131 IPR009071 -
Gso5g1097 150 SMART hmgende2 61 132 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1097 Gso-Chr5 34173197 34176676 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gso5g1097 HMG_box 2.2e-17 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1097 - - gmx:100305607 235.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1097 5 34173197 34176676 Gso8g0692 8 6354396 6357778 GST