Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1092 ATGTTGTCCCTAAAGATTAGTTTGACTATAGGCATAGTCCTTTCCATTGCATCCATAGTTTCCCATGCTGAAACAAGCTTGGATGTTGAAATTCAAGCTTTGAAAGCTTTCAAAAACTCCATCACTGCTGACCCAAATGGGGCTCTTGCAGATTGGGTTGACAGTCACCACCACTGCAACTGGTCTGGCATTGCATGTGATCCACCTTCAAATCATGTCATTTCAATTTCCCTGGTTAGTCTTCAGCTCCAAGGGGAGATTTCACCTTTCCTTGGAAACATTTCTGGCCTTCAGGTTTTTGATGTAACTTCAAACTCATTCTCTGGCTACATTCCTTCTCAGCTCAGTCTTTGCACTCAACTTACTCAACTGATTCTTGTTGACAATTCTTTATCAGGTCCTATCCCTCCTGAATTAGGAAATCTTAAAAGCCTGCAGTATTTAGACTTAGGTAACAACTTCTTGAATGGAAGCCTCCCTGACAGCATATTCAACTGCACTTCTTTGTTGGGTATTGCTTTTAATTTCAACAACCTTACTGGCAGAATCCCAGCAAACATTGGGAATCCAGTTAACCTTATACAGATTGCAGGTTTTGGAAATAGCTTGGTAGGGTCTATACCTCTTTCCGTAGGTCAATTAGCCGCTTTGCGAGCTCTTGATTTTAGCCAGAACAAGTTATCAGGTGTAATACCTCGAGAGATTGGAAATCTGACAAATTTAGAATACCTTGAATTGTTCCAAAATTCATTGAGTGGGAAAGTTCCTTCAGAGCTAGGTAAGTGTAGCAAACTTTTAAGCCTTGAGTTATCCGATAATAAGCTTGTTGGAAGTATTCCTCCTGAGCTAGGAAATTTAGTTCAGTTAGGGACATTGAAGTTACATCGGAATAACTTGAATTCCACCATTCCATCTTCCATATTCCAGTTGAAATCATTAACAAATTTAGGCCTCTCACAGAATAACTTAGAGGGAACAATATCTTCAGAGATTGGATCTATGAACTCCTTGCAAGTTCTAACCCTGCACTTAAATAAGTTTACTGGGAAGATCCCTTCGTCAATAACAAACTTGACAAACTTGACATATCTGTCAATGAGCCAGAATCTCCTCTCAGGTGAACTTCCTTCAAACTTGGGTGCGCTTCATGATTTGAAGTTTCTTGTTTTGAACTCCAACTGCTTTCATGGATCCATTCCCTCTAGCATTACCAATATTACTAGTCTAGTAAATGTAAGTTTGTCTTTTAATGCTTTAACTGGGAAAATTCCTGAGGGTTTTTCAAGGTCGCCTAATCTTACTTTCCTGTCTCTTACATCCAACAAAATGACTGGGGAAATCCCAAATGACCTCTATAACTGCTCAAATCTTAGCACTCTAAGTTTGGCAATGAACAACTTCAGTGGATTGATAAAATCAGATATCCAGAATCTCTCTAAACTCATACGCCTGCAGCTGAATGGAAATTCTTTCATAGGACCAATTCCACCAGAGATCGGAAACTTGAATCAACTCGTCACTTTATCCCTTTCTGAAAATACGTTTTCAGGTCAAATTCCTCCAGAACTTTCCAAACTTTCTCACCTTCAGGGGATCTCTCTCTATGACAATGAACTACAAGGTACAATACCTGATAAGCTCTCTGAATTAAAAGAACTAACAGAACTTTTGCTGCATCAAAATAAGTTGGTTGGTCAAATACCTGATTCTCTCTCAAAGCTTGAGATGCTTTCATACTTAGACCTTCATGGCAACAAACTTAATGGGTCCATTCCAAGAAGCATGGGAAAGCTTAACCATCTTTTAGCATTGGATCTCTCTCACAACCAGCTCACAGGAATAATTCCTGGAGATGTCATTGCACACTTCAAAGACATTCAGATGTATCTCAACCTTTCTTACAACCACTTGGTTGGAAATGTTCCAACTGAGTTGGGCATGTTGGGAATGATACAAGCTATTGATATTTCAAACAATAATCTTTCGGGTTTCATTCCCAAAACACTTGCTGGGTGCAGAAATCTTTTCAATCTTGATTTTTCAGGAAACAATATTTCAGGTCCTATTCCTGCAGAAGCTTTTAGTCACATGGACTTGCTTGAAAGCTTGAACCTCTCAAGAAATCATTTAAAAGGTGAAATCCCTGAAATATTGGCAGAGCTTGATCGTCTTAGTTCCCTAGATCTTTCTCAGAATGACTTGAAGGGAACTATTCCTGAGGGCTTTGCCAATCTTTCCAACTTGGTGCATCTCAACCTTTCATTCAATCAACTTGAAGGTCATGTACCAAAAACTGGAATATTTGCACACATCAATGCATCTAGTATTGTGGGAAACCGGGATCTTTGTGGAGCTAAGTTCCTACCACCATGCAGAGAGACAAAACATTCGCTGTCCAAGAAGAGCATATCTATTATTGCTTCACTTGGATCTCTTGCTATGCTTCTACTTTTGCTGATTCTAGTTCTCAATCGAGGCACCAAATTCTGCAATTCTAAAGAAAGAGATGCTAGTGTGAATCATGGACCAGACTACAATTCAGCATTGACACTTAAAAGGTTCAATCCAAACGAGTTGGAGATTGCCACTGGTTTTTTCAGTGCAGACAGCATCATAGGTGCTAGCAGTTTGAGCACAGTTTACAAGGGTCAAATGGAAGATGGCCGGGTTGTAGCCATAAAAAGATTGAATTTGCAACAATTCTCTGCCAAAACTGACAAGATCTTCAAGAGAGAAGCCAACACCTTGAGCCAGATGAGACATAGGAATTTGGTCAAGGTACTTGGATATGCCTGGGAGAGTGGGAAAATGAAGGCTTTGGTTCTAGAGTACATGGAGAATGGGAACTTGGAGAACATCATACATGGAAAAGGGGTAGATCAGTCTGTGATCTCTAGGTGGACATTATCTGAAAGAGTCCGAGTTTTCATTTCTATTGCTAGTGCATTGGATTATTTGCACTCTGGTTATGATTTTCCCATTGTACACTGTGATATAAAGCCTTCTAACATCCTTTTAGACAGAGAGTGGGAAGCTCATGTCAGTGACTTTGGGACAGCACGAATACTTGGTCTTCATGAGCAGGCTGGTAGTACCCTTTCCTCATCAGCAGCTTTGCAAGGCACAGTTGGTTATATGGCACCAGAATTTGCTTACATGAGGAAAGTAACCACTAAAGCGGATGTGTTCAGCTTTGGTATCATAGTAATGGAGTTTCTAACAAAAAGAAGGCCAACAGGGCTCTCAGAAGAGGAAGGTTTGCCAATCACTTTGCGTGAAGTAGTAGCAAAAGCCCTTGCAAATGGAATAGAACAATTTGTCAATATTGTGGACCCTTTGTTGACCTGGAATGTTACAAAAGAACATGATGAAGTGTTGGCAGAGCTCTTTAAGCTATCCCTGTGCTGCACCCTCCCTGATCCTGAACATCGACCCAACACAAATGAGGTTTTATCTGCCCTTGTGAAGCTTCAAACAACACTGTCTTGTTAA 3492 0.4026 MLSLKISLTIGIVLSIASIVSHAETSLDVEIQALKAFKNSITADPNGALADWVDSHHHCNWSGIACDPPSNHVISISLVSLQLQGEISPFLGNISGLQVFDVTSNSFSGYIPSQLSLCTQLTQLILVDNSLSGPIPPELGNLKSLQYLDLGNNFLNGSLPDSIFNCTSLLGIAFNFNNLTGRIPANIGNPVNLIQIAGFGNSLVGSIPLSVGQLAALRALDFSQNKLSGVIPREIGNLTNLEYLELFQNSLSGKVPSELGKCSKLLSLELSDNKLVGSIPPELGNLVQLGTLKLHRNNLNSTIPSSIFQLKSLTNLGLSQNNLEGTISSEIGSMNSLQVLTLHLNKFTGKIPSSITNLTNLTYLSMSQNLLSGELPSNLGALHDLKFLVLNSNCFHGSIPSSITNITSLVNVSLSFNALTGKIPEGFSRSPNLTFLSLTSNKMTGEIPNDLYNCSNLSTLSLAMNNFSGLIKSDIQNLSKLIRLQLNGNSFIGPIPPEIGNLNQLVTLSLSENTFSGQIPPELSKLSHLQGISLYDNELQGTIPDKLSELKELTELLLHQNKLVGQIPDSLSKLEMLSYLDLHGNKLNGSIPRSMGKLNHLLALDLSHNQLTGIIPGDVIAHFKDIQMYLNLSYNHLVGNVPTELGMLGMIQAIDISNNNLSGFIPKTLAGCRNLFNLDFSGNNISGPIPAEAFSHMDLLESLNLSRNHLKGEIPEILAELDRLSSLDLSQNDLKGTIPEGFANLSNLVHLNLSFNQLEGHVPKTGIFAHINASSIVGNRDLCGAKFLPPCRETKHSLSKKSISIIASLGSLAMLLLLLILVLNRGTKFCNSKERDASVNHGPDYNSALTLKRFNPNELEIATGFFSADSIIGASSLSTVYKGQMEDGRVVAIKRLNLQQFSAKTDKIFKREANTLSQMRHRNLVKVLGYAWESGKMKALVLEYMENGNLENIIHGKGVDQSVISRWTLSERVRVFISIASALDYLHSGYDFPIVHCDIKPSNILLDREWEAHVSDFGTARILGLHEQAGSTLSSSAALQGTVGYMAPEFAYMRKVTTKADVFSFGIIVMEFLTKRRPTGLSEEEGLPITLREVVAKALANGIEQFVNIVDPLLTWNVTKEHDEVLAELFKLSLCCTLPDPEHRPNTNEVLSALVKLQTTLSC* 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1092 1163 Gene3D Phosphorylase Kinase; domain 1 829 944 - -
Gso5g1092 1163 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 163 293 - -
Gso5g1092 1163 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 112 163 - -
Gso5g1092 1163 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 365 1158 - -
Gso5g1092 1163 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 288 369 - -
Gso5g1092 1163 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 116 - -
Gso5g1092 1163 SUPERFAMILY Protein kinase-like (PK-like) 843 1154 IPR011009 -
Gso5g1092 1163 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Gso5g1092 1163 Pfam Leucine rich repeat 652 710 IPR001611 GO:0005515
Gso5g1092 1163 Pfam Leucine rich repeat 552 611 IPR001611 GO:0005515
Gso5g1092 1163 ProSitePatterns Serine/Threonine protein kinases active-site signature. 994 1006 IPR008271 GO:0004672|GO:0006468
Gso5g1092 1163 Gene3D Ribonuclease Inhibitor 263 426 IPR032675 -
Gso5g1092 1163 CDD STKc_IRAK 872 1157 - -
Gso5g1092 1163 SUPERFAMILY L domain-like 544 763 - -
Gso5g1092 1163 Gene3D Ribonuclease Inhibitor 519 624 IPR032675 -
Gso5g1092 1163 ProSiteProfiles Protein kinase domain profile. 866 1161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1092 1163 Pfam Leucine Rich Repeat 144 166 IPR001611 GO:0005515
Gso5g1092 1163 Gene3D Ribonuclease Inhibitor 427 518 IPR032675 -
Gso5g1092 1163 Gene3D Ribonuclease Inhibitor 29 188 IPR032675 -
Gso5g1092 1163 Pfam Protein kinase domain 868 1152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1092 1163 SMART LRR_typ_2 697 720 IPR003591 -
Gso5g1092 1163 SMART LRR_typ_2 721 744 IPR003591 -
Gso5g1092 1163 SMART LRR_typ_2 502 526 IPR003591 -
Gso5g1092 1163 SMART LRR_typ_2 286 310 IPR003591 -
Gso5g1092 1163 SMART LRR_typ_2 358 382 IPR003591 -
Gso5g1092 1163 SMART LRR_typ_2 648 671 IPR003591 -
Gso5g1092 1163 SMART LRR_typ_2 598 622 IPR003591 -
Gso5g1092 1163 SMART LRR_typ_2 550 574 IPR003591 -
Gso5g1092 1163 SMART LRR_typ_2 238 262 IPR003591 -
Gso5g1092 1163 SMART LRR_typ_2 214 237 IPR003591 -
Gso5g1092 1163 SMART LRR_typ_2 142 166 IPR003591 -
Gso5g1092 1163 SMART LRR_typ_2 745 770 IPR003591 -
Gso5g1092 1163 SMART LRR_sd22_2 721 747 - -
Gso5g1092 1163 SMART LRR_sd22_2 358 381 - -
Gso5g1092 1163 SMART LRR_sd22_2 310 333 - -
Gso5g1092 1163 SMART LRR_sd22_2 214 240 - -
Gso5g1092 1163 SMART LRR_sd22_2 142 174 - -
Gso5g1092 1163 SMART LRR_sd22_2 550 573 - -
Gso5g1092 1163 SMART LRR_sd22_2 598 619 - -
Gso5g1092 1163 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 112 163 - -
Gso5g1092 1163 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 163 293 - -
Gso5g1092 1163 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 288 369 - -
Gso5g1092 1163 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 365 1158 - -
Gso5g1092 1163 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 1 116 - -
Gso5g1092 1163 Gene3D Ribonuclease Inhibitor 625 799 IPR032675 -
Gso5g1092 1163 Gene3D Ribonuclease Inhibitor 191 262 IPR032675 -
Gso5g1092 1163 SMART serkin_6 866 1161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1092 1163 SUPERFAMILY L domain-like 30 303 - -
Gso5g1092 1163 SUPERFAMILY RNI-like 220 618 - -
Gso5g1092 1163 Gene3D Transferase(Phosphotransferase) domain 1 945 1162 - -
Gso5g1092 1163 PRINTS Leucine-rich repeat signature 601 614 - -
Gso5g1092 1163 PRINTS Leucine-rich repeat signature 721 734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1092 Gso-Chr5 34100929 34105398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1092 20 1158 Receptor kinase-like Gene Family AT5G46330 53.833 0.0 1142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gso5g1092 Pkinase 4.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1092 K13420 - gmx:100788119 2221.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1092 5 34100929 34105398 Gso8g0690 8 6332368 6337173 GST