Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1086 ATGTCTGTTGAACCTAAGGAACTTTACTACCAGGACCTTGTCCTAGACCCCAATATTAATAATCAACATCAGGGCACAGAAGCAGGATCTAATAATACTATGTACGAAAAGCACTTTTCCTCTACCATAATTCCTTCAGATTCAACAGCATATGATTCATCACAAGCCTTTGATCCCTCTTACATGAGTTTAACTGAGTGTTTGCAAGGGGGCATGGACTACAATTCACTTGCAACTTCTTTTGGCCTTTCTCCTTCCTCGTCTGAGGTTTTTTCTTCTGTTGATGGGAACCAAAAGCCAGCAGTAGAAGGAGGAGATGGAGGTGGTGGTGGTGGTGGCAGTGAAACCCTTGCGACCCTTAACTCTTCAGTCTCTTCTTCATCTTCTGAAGCCGGGGCTGAGGAAGATTCTGGAAAGAGCAAAAAAGAAAGGCAGGTGAAAACAGAAGAAGGAGAAGAAAACTCTAAGAAAGGGAACAAGGAGAAGAAGAAAGGAGAGAAGAAGCAAAAGGAGCCAAGGTTTGCCTTCATGACCAAGAGTGAGGTTGATCACCTTGAAGATGGATACAGATGGAGAAAATATGGACAGAAAGCTGTCAAGAATAGCCCTTACCCAAGGAGCTACTACAGGTGCACAACACAGAAGTGCACAGTGAAGAAACGCGTGGAGAGGTCATTTCAGGACCCAACCACTGTGATAACAACGTATGAAGGTCAGCACAACCATCCGGTCCCCACTTCTCTCAGAGGGAATGCGGCTGCGGGAATGTTCACACCTTCTTCTTTGCTAGCCACACCAACTCCACTTGCAGCCGGGTCAAACTTCCCCCAAGATCTCTTCCTTCACATGCATCACCCTCACCACCAATATCACATTCACAACAACCTCTTCACCACACAGTCGACTACAAACACTACTACTGCTACTACTACCACTCCATCCTCGTTTTACTCTTCCTATAACAACATTAACAACTCTCTTCTTCACAACCAGTTTCTTCCTCCGGAATACGGCCTCCTTCAAGACATAGTTCCTTCCATGTTCCACAACAAGACCGGCCACCATCACCAGAATTAA 1077 0.455 MSVEPKELYYQDLVLDPNINNQHQGTEAGSNNTMYEKHFSSTIIPSDSTAYDSSQAFDPSYMSLTECLQGGMDYNSLATSFGLSPSSSEVFSSVDGNQKPAVEGGDGGGGGGGSETLATLNSSVSSSSSEAGAEEDSGKSKKERQVKTEEGEENSKKGNKEKKKGEKKQKEPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPTTVITTYEGQHNHPVPTSLRGNAAAGMFTPSSLLATPTPLAAGSNFPQDLFLHMHHPHHQYHIHNNLFTTQSTTNTTTATTTTPSSFYSSYNNINNSLLHNQFLPPEYGLLQDIVPSMFHNKTGHHHQN* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1086 358 SUPERFAMILY WRKY DNA-binding domain 177 245 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso5g1086 358 MobiDBLite consensus disorder prediction 115 133 - -
Gso5g1086 358 SMART WRKY_cls 185 244 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso5g1086 358 MobiDBLite consensus disorder prediction 85 179 - -
Gso5g1086 358 ProSiteProfiles WRKY domain profile. 180 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso5g1086 358 Pfam WRKY DNA -binding domain 186 243 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso5g1086 358 Gene3D WRKY domain 169 246 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso5g1086 358 MobiDBLite consensus disorder prediction 134 179 - -
Gso5g1086 358 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 26 347 IPR044810 GO:0003700
Gso5g1086 358 PANTHER WRKY TRANSCRIPTION FACTOR 81 26 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1086 Gso-Chr5 34013972 34016362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1086 45 348 WRKY Transcription Factor Family AT4G18170 49.518 1.06e-74 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso5g1086 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1086 - - gmx:100787050 605.134