Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1077 ATGGAGAAGCTACTTTGCTTCAGCTTCAGGGTTTTCACATTTTCATTCCAGTGCTTAATGGCCTTAACATTAGCCCTTAGTGGAACCAACTTCACCACAGATAAGCTTGCACTTCTTGCTCTCAAATCTTCAATCACTAGAGACCCTCACAATTTCCTCACTCATAATTGGTCTGCCACCACTTCTGTATGCAATTGGGTTGGTGTCACTTGTGATGCTTACCATGGAAGGGTAAGGACATTGAATCTTGGCGACATGTCTCTTAGTGGCACCATGCCCTCTCACTTGGGAAACCTTACCTTCCTTAATAAACTTGACCTTGGCGGAAACAAATTCCATGGTCAGTTGCCAGAGGAATTAGTCCAATTGCATAGGTTGAAGTTTCTCAACTTGAGCTACAATGAATTTAGTGGAAATGTTTCAGAATGGATTGGAGGATTATCTACACTCAGATATTTAAACCTTGGAAATAATGACTTTGGTGGTTTTATTCCAAAATCTATTTCCAATCTTACAATGCTAGAGATCATGGATTGGGGCCACAATTTCATTCAAGGAACCATTCCACCTGAAGTAGGCAAAATGACCCAATTGAGGGTTTTATCAATGTATTCAAACCGTCTTTCAGGGACCATTCCTAGAACTGTTTCTAACCTCTCTTCCCTCGAAGGAATAAGTTTATCCCATAACTCTCTTTCAGGAGGCATTCCAAGTGAGATTGGTGAACTTCCACAATTAGAAATAATGTATCTTGGAGATAATCCACTTGGTGGCTCCATACCATCAACAATCTTCAATAACTCAATGCTGCAAGATATTGAACTTGGCTCCAGCAATTTATCTGGAAGTCTTCCATCAAATTTGTGCCAAGGACTTCCAAATATCCAAATACTTTACTTAGGTTTCAACCAGTTATCGGGTAAATTGCCATATATGTGGAATGAGTGCAAAGTGTTGACAGATGTGGAATTATCACAGAACAGGTTCGGCAGAGGAAGCATACCTGCTGACATTGGAAACTTACCTGTGCTAAACTCCATTTATCTTGATGAGAACAACTTGGAAGGAGAAATCCCATTATCTCTTTTTAACATATCTTCCATGAGAGTACTCAGCCTGCAAAAAAACAAGTTAAACGGTAGCCTAACAGAAGAGATGTTTAATCAGCTTCCATTCCTACAAATATTGTCTTTGGATAATAATCAATTTAAGGGAAGCATTCCAAGATCTATTGGCAATTGTACATTGCTTGAAGAATTATACTTGGGTGATAACTGCTTCACAGGCTCTATACCCAAGGAGATTGGTGATCTTCCTATGCTTGCGAATTTAACTTTGGGAAGTAACCATTTAAATGGATCTATTCCCTCAAATATCTTTAACATGTCATCATTAACTTACTTGTCTTTGGAACATAATTCTCTCTCAGGATTTCTTCCATTACACATTGGCCTAGAAAACTTACAAGAACTATACTTGCTTGAAAACAAACTTTGTGGAAATATTCCAAGTAGCTTATCCAATGCTTCTAAGCTTAACTATGTGGATTTGAAGTTTAATAAGTTCGATGGAGTCATACCTTGTTCACTTGGGAATTTGAGATACCTTCAGTGGTTGGATGTGGCATTCAATAATTTAACTACTGATGCTTCCACTATTGAATTAAGCTTCCTTAGTTCTTTGAATTATCTTCAAATATCAGGGAATCCAATGCATGGAAGCCTTCCCATATCAATTGGAAACATGTCGAATTTGGAACAGTTCATGGCAGATGAGTGCAAAATTGATGGCAAAATTCCATCGGAAATTGGAAATTTAAGCAACTTGTTCGCACTAAGTTTGTACCACAATGATTTGAGCGGAACAATTCCAACTACAATAAGTAATTTGCAGTCTCTTCAATATCTGAGACTTGGAAACAACCAACTACAAGGAACCATCATTGATGAGCTTTGTGCAATCAACCGGCTGAGTGAGTTGGTCATAACTGAAAATAAGCAAATTTCAGGAATGATCCCAACATGCTTTGGTAATCTTACTTCTCTAAGAAAGCTCTACTTGAACTCAAATAGACTGAATAAAGTTTCCTCTTCTCTTTGGAGTCTCAGAGACATTTTGGAACTAAACTTATCTGACAATGCTTTAACTGGATTTCTTCCTCTTGATGTTGGGAATTTAAAGGCTGTTATATTTTTGGATCTATCAAAGAATCAGATTTCAGGAAGCATTCCACGGGCCATGACAGGATTGCAAAATTTGCAAATTCTCAACTTAGCACATAATAAATTGGAGGGGAGCATTCCTGATTCATTTGGTAGTTTGATAAGTTTGACATACTTGGACTTATCCCAAAACTATTTGGTTGACATGATTCCAAAATCCTTGGAGTCAATTCGTGATCTCAAATTTATCAATCTTTCTTATAACATGTTAGAAGGTGAGATTCCCAACGGTGGAGCTTTCAAAAATTTCACAGCTCAATCTTTCATATTCAATAAAGCACTTTGTGGAAATGCACGGTTACAAGTCCCCCCATGCAGTGAATTAATGAAGAGAAAAAGGTCAAATGCACATATGTTTTTCATCAAATGCATATTGCCTGTAATGTTGTCAACCATTTTGGTTGTTTTATGTGTGTTCCTTCTGAAAAAGAGTCGAAGAAAAAAGCATGGTGGTGGTGATCCTGCTGAAGTCAGTTCATCAACTGTACTAGCAACAAGAACAATTTCCTACAATGAACTTTCACGGGCAACCAATGGATTTGATGAGAGTAATTTGCTTGGTAAGGGTAGTTTTGGCTCTGTGTTCAAAGGTATACTTCCAAATAGGATGGTTGTTGCAGTCAAATTATTTAATTTGGACCTTGAATTGGGATCAAGGAGCTTTAGTGTAGAATGTGAAGTAATGCGGAATCTGCGACACCGAAATCTCATCAAGATCATTTGTAGTTGCTCAAATTCTGATTACAAGCTTTTAGTAATGGAATTCATGTCCAATGGCAACCTTGAAAGATGGTTGTATTCTCATAACTATTGTTTAGACTTCTTGCAAAGGCTAAATATAATGATAGATGTGGCTTCTGCATTGGAATATATGCATCATGGTGCTTCGCCAACTGTGGTTCATTGTGATGTAAAGCCTAGTAATGTCTTATTGGATGAAGACATGGTTGCACATGTTAGTGACTTAGGCATTGCCAAACTTCTTGATGAAGGACAATCCCAAGAGTATACCAAGACCATGGCTACATTTGGCTACATTGCACCAGAGTTTGGATCCAAGGGGACTATTTCTACAAAAGGAGATGTGTACAGTTTTGGGATTTTGTTGATGGAAACATTCTCAAGAAAGAAGCCAACAGATGAAATGTTTGTTGAAGGATTGAGCATAAAAGGTTGGATTAGTGAATCATTACCCCATGCCAATACTCAAGTTGTGGATTCCAATTTGTTAGAGGATGAAGAACACAGTGCTGATGACATAATATCATCTATATCATCTATTTATAGAATAGCCCTGAATTGTTGTGCAGATTTGCCTGAAGAAAGAATGAATATGACGGATGTTGCTGCATCACTAAACAAAATCAAGGTCATGTTTCAGAAAAATAACAAGTACATGCGAGCACAAGTCCATGCAACCTAA 3645 0.3767 MEKLLCFSFRVFTFSFQCLMALTLALSGTNFTTDKLALLALKSSITRDPHNFLTHNWSATTSVCNWVGVTCDAYHGRVRTLNLGDMSLSGTMPSHLGNLTFLNKLDLGGNKFHGQLPEELVQLHRLKFLNLSYNEFSGNVSEWIGGLSTLRYLNLGNNDFGGFIPKSISNLTMLEIMDWGHNFIQGTIPPEVGKMTQLRVLSMYSNRLSGTIPRTVSNLSSLEGISLSHNSLSGGIPSEIGELPQLEIMYLGDNPLGGSIPSTIFNNSMLQDIELGSSNLSGSLPSNLCQGLPNIQILYLGFNQLSGKLPYMWNECKVLTDVELSQNRFGRGSIPADIGNLPVLNSIYLDENNLEGEIPLSLFNISSMRVLSLQKNKLNGSLTEEMFNQLPFLQILSLDNNQFKGSIPRSIGNCTLLEELYLGDNCFTGSIPKEIGDLPMLANLTLGSNHLNGSIPSNIFNMSSLTYLSLEHNSLSGFLPLHIGLENLQELYLLENKLCGNIPSSLSNASKLNYVDLKFNKFDGVIPCSLGNLRYLQWLDVAFNNLTTDASTIELSFLSSLNYLQISGNPMHGSLPISIGNMSNLEQFMADECKIDGKIPSEIGNLSNLFALSLYHNDLSGTIPTTISNLQSLQYLRLGNNQLQGTIIDELCAINRLSELVITENKQISGMIPTCFGNLTSLRKLYLNSNRLNKVSSSLWSLRDILELNLSDNALTGFLPLDVGNLKAVIFLDLSKNQISGSIPRAMTGLQNLQILNLAHNKLEGSIPDSFGSLISLTYLDLSQNYLVDMIPKSLESIRDLKFINLSYNMLEGEIPNGGAFKNFTAQSFIFNKALCGNARLQVPPCSELMKRKRSNAHMFFIKCILPVMLSTILVVLCVFLLKKSRRKKHGGGDPAEVSSSTVLATRTISYNELSRATNGFDESNLLGKGSFGSVFKGILPNRMVVAVKLFNLDLELGSRSFSVECEVMRNLRHRNLIKIICSCSNSDYKLLVMEFMSNGNLERWLYSHNYCLDFLQRLNIMIDVASALEYMHHGASPTVVHCDVKPSNVLLDEDMVAHVSDLGIAKLLDEGQSQEYTKTMATFGYIAPEFGSKGTISTKGDVYSFGILLMETFSRKKPTDEMFVEGLSIKGWISESLPHANTQVVDSNLLEDEEHSADDIISSISSIYRIALNCCADLPEERMNMTDVAASLNKIKVMFQKNNKYMRAQVHAT* 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1077 1214 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1040 1052 IPR008271 GO:0004672|GO:0006468
Gso5g1077 1214 ProSiteProfiles Leucine-rich repeat profile. 752 774 IPR001611 GO:0005515
Gso5g1077 1214 SMART LRR_typ_2 630 655 IPR003591 -
Gso5g1077 1214 SMART LRR_typ_2 147 171 IPR003591 -
Gso5g1077 1214 SMART LRR_typ_2 679 702 IPR003591 -
Gso5g1077 1214 SMART LRR_typ_2 774 797 IPR003591 -
Gso5g1077 1214 SMART LRR_typ_2 243 267 IPR003591 -
Gso5g1077 1214 SMART LRR_typ_2 750 773 IPR003591 -
Gso5g1077 1214 SMART LRR_typ_2 438 462 IPR003591 -
Gso5g1077 1214 SMART LRR_typ_2 365 389 IPR003591 -
Gso5g1077 1214 SMART LRR_typ_2 195 219 IPR003591 -
Gso5g1077 1214 SMART LRR_typ_2 485 509 IPR003591 -
Gso5g1077 1214 SMART LRR_typ_2 99 123 IPR003591 -
Gso5g1077 1214 SMART LRR_typ_2 390 414 IPR003591 -
Gso5g1077 1214 SMART LRR_typ_2 292 315 IPR003591 -
Gso5g1077 1214 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 332 1201 - -
Gso5g1077 1214 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 5 237 - -
Gso5g1077 1214 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 195 388 - -
Gso5g1077 1214 Pfam Leucine Rich Repeat 150 171 IPR001611 GO:0005515
Gso5g1077 1214 Gene3D Ribonuclease Inhibitor 30 181 IPR032675 -
Gso5g1077 1214 SUPERFAMILY L domain-like 405 503 - -
Gso5g1077 1214 ProSiteProfiles Protein kinase domain profile. 921 1200 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1077 1214 ProSitePatterns Protein kinases ATP-binding region signature. 927 949 IPR017441 GO:0005524
Gso5g1077 1214 Pfam Protein kinase domain 922 1188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1077 1214 Gene3D Phosphorylase Kinase; domain 1 902 996 - -
Gso5g1077 1214 SUPERFAMILY L domain-like 43 380 - -
Gso5g1077 1214 Gene3D Transferase(Phosphotransferase) domain 1 997 1213 - -
Gso5g1077 1214 Pfam Leucine rich repeat 656 715 IPR001611 GO:0005515
Gso5g1077 1214 Pfam Leucine rich repeat 393 451 IPR001611 GO:0005515
Gso5g1077 1214 Pfam Leucine rich repeat 197 256 IPR001611 GO:0005515
Gso5g1077 1214 Pfam Leucine rich repeat 752 811 IPR001611 GO:0005515
Gso5g1077 1214 Gene3D Ribonuclease Inhibitor 290 385 IPR032675 -
Gso5g1077 1214 Gene3D Ribonuclease Inhibitor 182 289 IPR032675 -
Gso5g1077 1214 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Gso5g1077 1214 PANTHER - 195 388 - -
Gso5g1077 1214 PANTHER - 332 1201 - -
Gso5g1077 1214 PANTHER - 5 237 - -
Gso5g1077 1214 Gene3D Ribonuclease Inhibitor 553 854 IPR032675 -
Gso5g1077 1214 SMART LRR_sd22_2 485 511 - -
Gso5g1077 1214 SMART LRR_sd22_2 750 771 - -
Gso5g1077 1214 SMART LRR_sd22_2 195 221 - -
Gso5g1077 1214 SMART LRR_sd22_2 774 800 - -
Gso5g1077 1214 SMART LRR_sd22_2 679 701 - -
Gso5g1077 1214 SMART LRR_sd22_2 462 483 - -
Gso5g1077 1214 SMART LRR_sd22_2 606 632 - -
Gso5g1077 1214 SMART serkin_6 921 1200 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1077 1214 SUPERFAMILY RNI-like 485 817 - -
Gso5g1077 1214 SUPERFAMILY Protein kinase-like (PK-like) 900 1193 IPR011009 -
Gso5g1077 1214 Gene3D Ribonuclease Inhibitor 386 552 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1077 Gso-Chr5 33900143 33907121 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1077 3 1197 Receptor kinase-like Gene Family AT5G46330 32.059 1.13e-169 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gso5g1077 Pkinase 4.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1077 - K13420 gmx:100784397 2358.18