Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1060 ATGGTGAAAATCTCACTTGGTGGGTACGATGATGGGGAAGGACCCAGCAACCGAACCCATAAGCGACGCAGGGAAGAGGATGATGATGATGAAGAAGAAGAGCAACAACAACAACGAAGCTTTGAAATGGTGGACCCTTCAATTGGAACTCAGGAGCAAGAAGATCACGCTGCTCCACACCACGATGGATCGAATTCTAACGCAAATGGGGCTGGAACCAGTAGCAGGGATAGGTCCGTTCCAATCTTCGTTTCCGACCCTGATGTCCTCGATTGCTGCATTTGCTATGAACCCTTGGCTGCCCCTGTGTTCCAGTGTGAGAATGGACATATTGCTTGCTCTACTTGCTGTGTGAGACTCAGTAACAAGTGTCCTATGTGTTTAATGCCCATTGGTTATAACCGTTGCCGGGCTATTGAGAAGGTCTTGGAGTGTATTAAAATGTCATGCCCAAATGCAAACTATGGCTGCAAAGAGACATTTAGTTACAGCAGGAAAAACAACCATGAGAAGGAATGCATCTATCTACCATGTTCATGCCCTCTTACTGGTTGTGATTTTGTTGCCTCATCCAAGGAGTTATTCCTCCACTTCAGCCATAGACATGTAGGCATGGGAACACGGTTCGCATATGATAAATTTTTCACTGTATTCTTAAGTATTAACCAGAGAACAATTGTTCTTCAAGAGAAAAATGATGGTAATCTGTTTATTGTTCACAATAACCATGAGCATCTGGGGAACATAGTCCGCATTAGCTGCATTGGCCCCAAGTCCATGGCAGAGTTTCAGTATGAAGTCTTGGCTAGGCATCAAGGAAACGCTCTGATACTACAATCTTTTACCAAGATCGTGCAAGGGCAATATGCTGATGCTCCATCAAGTACGTTCCTTTTGATTCCGTCTTGTTTGTTTGGCTCTCCACAACTGAAACTGGATATTCGCATAAAGTCACACCATTAA 963 0.4424 MVKISLGGYDDGEGPSNRTHKRRREEDDDDEEEEQQQQRSFEMVDPSIGTQEQEDHAAPHHDGSNSNANGAGTSSRDRSVPIFVSDPDVLDCCICYEPLAAPVFQCENGHIACSTCCVRLSNKCPMCLMPIGYNRCRAIEKVLECIKMSCPNANYGCKETFSYSRKNNHEKECIYLPCSCPLTGCDFVASSKELFLHFSHRHVGMGTRFAYDKFFTVFLSINQRTIVLQEKNDGNLFIVHNNHEHLGNIVRISCIGPKSMAEFQYEVLARHQGNALILQSFTKIVQGQYADAPSSTFLLIPSCLFGSPQLKLDIRIKSHH* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1060 320 ProSiteProfiles Zinc finger RING-type profile. 92 127 IPR001841 -
Gso5g1060 320 MobiDBLite consensus disorder prediction 62 79 - -
Gso5g1060 320 MobiDBLite consensus disorder prediction 1 79 - -
Gso5g1060 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 19 318 IPR044286 -
Gso5g1060 320 SUPERFAMILY RING/U-box 91 134 - -
Gso5g1060 320 SUPERFAMILY TRAF domain-like 147 316 - -
Gso5g1060 320 Pfam Seven in absentia protein family 135 286 IPR018121 GO:0005737|GO:0006511|GO:0007275
Gso5g1060 320 ProSiteProfiles Zinc finger SIAH-type profile. 145 203 IPR013010 GO:0008270
Gso5g1060 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 198 IPR013083 -
Gso5g1060 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 19 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1060 Gso-Chr5 33705801 33707901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1060 68 202 C3H Transcription Factor Family AT2G41980 36.429 7.59e-21 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1060 K04506 - gmx:100778869 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1060 5 33705801 33707901 Gso8g0660 8 6089431 6091637 GST