Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1053 ATGGACAACTATCAAGGTGATTTAAGTGACATAATTCGTGCTAGTGGTGCATCGTATGGCACTTGCAGCACGGGAACTCCATCATCTGAAGCTGCTAATCCCTTCTCTCGTGGTCACTTGCAATTCTCTTCTGATCCCATGATTTTCTCTTGTGTTTTGGAAGGGTTCAATAGCAACTTCGGTGATCCCTTCTCAAACATGAGAGATCCCTTTCTACACGAGCTTGATTTGCCTCCTTCTGCCTACTTTAACATCACAACAAGTTCATCTGCAGAAATGAGCAGTTCTGGGGCATTGGAAGAAGCAACTTGTTTTGGTGGTGGGGTTGTTGCTGGTAGTAGTAGTAGTAGTAGTAATAGTTGTGTTTTGGCACAGAAGATTCTTGAGGATGATGATATGAGAAGGCCATGTAACAGCATATTGTCAAACATGATTCAGATCTCTCCCAATGATAAGTTACCCATCTCGCCAGCGGTGGATGCTTTGTCAAGGGCACTCAAGCCTTCTAGTATGGTAATTTCAGGTGACAACATGATTGATTCAAAGACCTCTATAGATCATTGCTTGGTGGACAACACAGAAGTGCAGATCTCATCTCCAAGGAATCCAGGTCTTAAGAGAAGAAAGAGCCAGGCAAAGAAGTCGATTTGTGTTCCTGCACCAACTGCACCAAATAGCAGACGAAGTGGCGAGGTAGTTCCTTCTGATCTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGATTCTCCATATCCAAGGGGTTACTATAGATGCAGCAGCTCAAAGGGTTGTCCAGCAAGGAAACAAGTTGAAAGGAGCAGAACAGACCCAAACATGTTGGTCATTACTTACACGTCAGAGCACAACCATCCATGGCCAACACACAGAAATGCTCTCGCTGGTTCATCTCGATCCCAACCATCGAAAAACAACAACATTGCTGCTTCAAAGAATGAGGAAGAAGAGGAGGAGGAGAGCAACAGTGGCAGCAATAATGTAAATAACAGTGCATTTGTGAGGGAAGAAGAGAAGCAGCTTGAGATGGATGATGGAGAATTCAGTGATATTGGAATCCCTTATTGCAAGCCAATATCTAAGATGAAGAACAGCCAACAACTTGATCAGGGTTTGTTAGCAGAATTGGGAGAAATAGAATTTGCTGACTCAGTAAACCTATTGTCTCCACCACAAGGTTTTGATAATCAGAAAAGGGAATCCAACACTTTAGATTCATTCCATTTCTTTGACTGGAGAGGTGACAACAGCACCAAGTACCACCTTGTTTGA 1293 0.4323 MDNYQGDLSDIIRASGASYGTCSTGTPSSEAANPFSRGHLQFSSDPMIFSCVLEGFNSNFGDPFSNMRDPFLHELDLPPSAYFNITTSSSAEMSSSGALEEATCFGGGVVAGSSSSSSNSCVLAQKILEDDDMRRPCNSILSNMIQISPNDKLPISPAVDALSRALKPSSMVISGDNMIDSKTSIDHCLVDNTEVQISSPRNPGLKRRKSQAKKSICVPAPTAPNSRRSGEVVPSDLWAWRKYGQKPIKDSPYPRGYYRCSSSKGCPARKQVERSRTDPNMLVITYTSEHNHPWPTHRNALAGSSRSQPSKNNNIAASKNEEEEEEESNSGSNNVNNSAFVREEEKQLEMDDGEFSDIGIPYCKPISKMKNSQQLDQGLLAELGEIEFADSVNLLSPPQGFDNQKRESNTLDSFHFFDWRGDNSTKYHLV* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1053 430 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 422 IPR044810 GO:0003700
Gso5g1053 430 Gene3D WRKY domain 208 288 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso5g1053 430 MobiDBLite consensus disorder prediction 197 231 - -
Gso5g1053 430 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 5 422 - -
Gso5g1053 430 SUPERFAMILY WRKY DNA-binding domain 232 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso5g1053 430 MobiDBLite consensus disorder prediction 287 339 - -
Gso5g1053 430 Pfam WRKY DNA -binding domain 236 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso5g1053 430 MobiDBLite consensus disorder prediction 287 316 - -
Gso5g1053 430 SMART WRKY_cls 234 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso5g1053 430 MobiDBLite consensus disorder prediction 259 278 - -
Gso5g1053 430 ProSiteProfiles WRKY domain profile. 229 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1053 Gso-Chr5 33645730 33650271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1053 1 395 WRKY Transcription Factor Family AT2G34830 40.783 9.50e-79 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso5g1053 WRKY 3.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1053 - - gmx:100776919 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1053 5 33645730 33650271 Gso8g0653 8 6027032 6031148 GST