LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso5g1049	ATGGACTGGAGGCGCAGGACCAAGAACAAGAAGCACCACCCTCCTCCTCCGCCGCAGCCGCAACCGCAACCGCAACCGCGCTTGGAGCGTCTTAACGCCAAAAAAGGCATCAATTACCAACCACCACCTTCTCCTCCTTCACCATCTTCTTCTTCTGCTTCCGTTTCTTCTTCTTCTCTCTTGGATCACCAAACCAGCTTCCGCCTCTTCGGCTTCGACGGCGAGTTCGACCGCATCTTCCAGACGCTGGGCCTCTCCGGCCCAGAAGACTTCTCCATCCCCACCGCAGATTGGGAGGCCCGCAAGGCCCGCTTATCAGGGCCCACCACTCCTCCTCCTCCTCCTCCTCCTCCTCACGCGCTTCCCACTTCCCTTCAAGATGACGCCGTTTCGCTTCCCGTTGCGGTTTCTTCTTCCTCCCCCTGGTCTTCCGGGGAGCACAACGTGGGTACTAGGGGCAGTGTCGGTAGATTGAATTTGAGACACGGCGAAAGGAGCGTGCTTTTCACCGATTCCAGTTCCTTCACCACTTCCCACGACGATGACAGTGATGTTGGTTGCGAGAGGGAGAGGGAGAGGGAGAGGGCTTGTTTGGCTCCTAATTCTGCACCCGCTGATGAGTTGGTTATTCCGTTTAACTCCTCCGGCGAGTGGTTCAGACAGACCTTCACCTCGTGGCAGAAAGGTGACGTCTTGGGAAATGGGTCCTTCGGAACTGTCTATGAAGGCTTCACTGATGATGGATTCTTTTTTGCGGTAAAGGAGGTGTCTTTGCTGGATGAAGGTAGCCAGGGAAAGCAGAGTTTTTTCCAACTTCAGCAGGAAATATCTCTTTTGAGTAAGTTTGAGCATAAAAACATAGTTCGATATTATGGCTCAGACAAGGACAAAAGTAAACTATATATCTTCCTTGAGCTTATGTCAAAAGGGTCCTTAGCAAGTCTCTATCAAAAGTACCGTTTAAATGATTCACAAGTTTCTGCATACACAAGGCAGATTTTAAGTGGCTTGAAGTATCTTCATGATCATAATGTGGTCCACAGGGATATCAAGTGTGCTAATATACTGGTTGATGTAAGTGGGCAAGTCAAGCTTGCAGATTTTGGGTTGGCAAAGGCAACGAAATTTAATGATGTTAAATCAAGCAAAGGCTCTCCATACTGGATGGCCCCTGAGGTTGTTAACTTAAAGAACCAAGGTGGTTATGGGCTAGCAGCTGATATATGGAGCTTAGGGTGTACCGTTTTGGAGATGTTGACAAGGCAGCCTCCTTATTCTGATTTGGAAGGAATGCAAGCATTATTTCGAATTGGCAGGGGTGAACCTCCACCTATTCCTGAATATTTATCTAAGGAAGCCCGAGATTTCATTCTTGAATGCTTACAAGTTAACCCAAACGATCGTCCAACTGCAGCTCAGCTATTTGGTCATCCATTTCTAAGGAGAACATTTCTATCTCCCTTAAGTTTTGCTTCTCCACACAGGAATATCTATCGGCTATAA	1503	0.4837	MDWRRRTKNKKHHPPPPPQPQPQPQPRLERLNAKKGINYQPPPSPPSPSSSSASVSSSSLLDHQTSFRLFGFDGEFDRIFQTLGLSGPEDFSIPTADWEARKARLSGPTTPPPPPPPPHALPTSLQDDAVSLPVAVSSSSPWSSGEHNVGTRGSVGRLNLRHGERSVLFTDSSSFTTSHDDDSDVGCERERERERACLAPNSAPADELVIPFNSSGEWFRQTFTSWQKGDVLGNGSFGTVYEGFTDDGFFFAVKEVSLLDEGSQGKQSFFQLQQEISLLSKFEHKNIVRYYGSDKDKSKLYIFLELMSKGSLASLYQKYRLNDSQVSAYTRQILSGLKYLHDHNVVHRDIKCANILVDVSGQVKLADFGLAKATKFNDVKSSKGSPYWMAPEVVNLKNQGGYGLAADIWSLGCTVLEMLTRQPPYSDLEGMQALFRIGRGEPPPIPEYLSKEARDFILECLQVNPNDRPTAAQLFGHPFLRRTFLSPLSFASPHRNIYRL*	501

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso5g1049	500	PRINTS	Tyrosine kinase catalytic domain signature	304	317	IPR001245	GO:0004672\|GO:0006468
	Gso5g1049	500	PRINTS	Tyrosine kinase catalytic domain signature	339	357	IPR001245	GO:0004672\|GO:0006468
	Gso5g1049	500	PRINTS	Tyrosine kinase catalytic domain signature	406	428	IPR001245	GO:0004672\|GO:0006468
	Gso5g1049	500	PRINTS	Tyrosine kinase catalytic domain signature	449	471	IPR001245	GO:0004672\|GO:0006468
	Gso5g1049	500	MobiDBLite	consensus disorder prediction	130	150	-	-
	Gso5g1049	500	Gene3D	Transferase(Phosphotransferase) domain 1	224	495	-	-
	Gso5g1049	500	ProSitePatterns	Protein kinases ATP-binding region signature.	232	254	IPR017441	GO:0005524
	Gso5g1049	500	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	208	483	-	-
	Gso5g1049	500	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	24	120	-	-
	Gso5g1049	500	MobiDBLite	consensus disorder prediction	1	60	-	-
	Gso5g1049	500	SMART	serkin_6	226	480	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso5g1049	500	SUPERFAMILY	Protein kinase-like (PK-like)	225	491	IPR011009	-
	Gso5g1049	500	ProSiteProfiles	Protein kinase domain profile.	226	480	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso5g1049	500	PANTHER	SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	208	483	-	-
	Gso5g1049	500	PANTHER	SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	24	120	-	-
	Gso5g1049	500	Pfam	Protein kinase domain	227	480	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso5g1049	500	MobiDBLite	consensus disorder prediction	103	156	-	-
	Gso5g1049	500	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	345	357	IPR008271	GO:0004672\|GO:0006468
	Gso5g1049	500	MobiDBLite	consensus disorder prediction	107	122	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso5g1049	Gso-Chr5	33594148	33599759	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso5g1049	223	482	MAP Kinase Kinase Kinase	AT4G08500	68.846	5.99e-127	381

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Gso5g1049		Pkinase	6.5e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso5g1049	-		K13414	gmx:100820552	892.493

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso5g1049	5	33594148	33599759	Gso8g0649	8	5992066	5997504	GST
	Gso5g1049	5	33594148	33599759	Gso15g0419	15	3825970	3830283	PCT
	Gso15g0418	15	3818421	3824667	Gso5g1049	5	33594148	33599759	PCT