Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1048 ATGGGTAGAAGCCGAGAAAAACCCACAAAGATGGAAATTGATCTCTCTTTGAAGATAGATACTGATGATGAGCATAAAGAAGAAGAAGATGAGCGAGTGAAAGAGGATGAGGAGCAAGAAATGGCACAGATTCAGGATAATAATAAGGAAGAAATCCCTGAAGCCACAGCTGGTGAAATAGAAGATGATGCATCAGTCATAGAAACATCTTTGCAAGATAACACAAAAACAAAAGAGTTAAGTGTCTTACAAATGGAGATGGAGAGCATGAAAGAGGAAAACAAAGTTCTGAGGAAAGTTGTAGAACAAACAATGAAAGACTATTATGATCTGCAAATGAAATTCTCAGCCATCCAGGAAAACAATAAAAGAAAGGATCATGAAATTTCTCTCTCACTTCAAGACATTGCGACCACCAGCGGTGAAGGGCCATCGAGAATTCTTGAGATCTTTAACAAACAAATGCAAAGTGCTCCATCTCCTCCACACCCTGATCATGATGATGATAGTTTAAGCGAGAGTGAATTGGGTTTATCACTAAGGTTGCAACCAAGCACAAGCCATCATAAAGAAAGTGATGTGGGAAATAATAAGGAAGACAAAAATGATCAACAGTTGGCAAGTTATGCATCAGTGCAGAACAAATTACAGCGGACAAATTGCTTGCCCGGTATTACTACCCATGCTGCTTCCCCTCCTAATAGAAAGGCTAGGGTTTCTGTTAGAGCAAGATGTGAAGCTGCCACAATGAATGATGGGTGCCAATGGAGAAAATATGGGCAGAAAATTGCAAAAGGAAATCCATGTCCACGAGCCTATTATCGTTGCACTGTAGCCCCAGGCTGCCCTGTTAGGAAACAGGTGCAAAGATGTATAGATGACATGTCCATACTAATTACAACCTATGAAGGGACACATAACCATCCACTCCCTGTGGGTGCAACTGCTATGGCTTCCACAGCTTCTGCAGCAGCTTCATTCATGTTGCTAGACTCAAGCAACCCCATTTCAGATGGCACCTCCACTTTCACTCAAGCACCGTTTCCTTACAACACCTTCCACTCTCTAAACCCAGCTTCAAATTTTAGGAGCATAAGCCCCGGTGATCCATCCAAAGGGATTGTTCTTGATCTCACTAGCAACCTCAATGAACCACCACTACGTTTTTCCAGTGGTAGCTCCTCCAATACTACAACTGATCCTCGTTTTTCTTGGATGCAAAACAAATACCAAGGTGGTGGTGCAATTGCAATGAACAACACTTTTCACAAGCCTAGGGCATTGGATATTCATGATAGAATTTGGAAAGGAGAAGAAAGCAATAATAATAAGCCACTAGATCATGACAATGTGTCCTCAATTGCCTCAGATCCTAAGTTTAGGGTTGCTGTTGCTGCGGCCATAACATCTCTCATGAATAAAGAGAGCCACGCTACTCACCCTATAGGAACTTCCTTTGGCCCTAGGAGTGGCCAAAATGGTAGCTAG 1488 0.422 MGRSREKPTKMEIDLSLKIDTDDEHKEEEDERVKEDEEQEMAQIQDNNKEEIPEATAGEIEDDASVIETSLQDNTKTKELSVLQMEMESMKEENKVLRKVVEQTMKDYYDLQMKFSAIQENNKRKDHEISLSLQDIATTSGEGPSRILEIFNKQMQSAPSPPHPDHDDDSLSESELGLSLRLQPSTSHHKESDVGNNKEDKNDQQLASYASVQNKLQRTNCLPGITTHAASPPNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSSNPISDGTSTFTQAPFPYNTFHSLNPASNFRSISPGDPSKGIVLDLTSNLNEPPLRFSSGSSSNTTTDPRFSWMQNKYQGGGAIAMNNTFHKPRALDIHDRIWKGEESNNNKPLDHDNVSSIASDPKFRVAVAAAITSLMNKESHATHPIGTSFGPRSGQNGS* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1048 495 SMART WRKY_cls 250 310 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso5g1048 495 SUPERFAMILY WRKY DNA-binding domain 243 311 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso5g1048 495 Coils Coil 80 107 - -
Gso5g1048 495 MobiDBLite consensus disorder prediction 1 52 - -
Gso5g1048 495 MobiDBLite consensus disorder prediction 37 52 - -
Gso5g1048 495 MobiDBLite consensus disorder prediction 1 28 - -
Gso5g1048 495 MobiDBLite consensus disorder prediction 155 176 - -
Gso5g1048 495 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 12 480 IPR044810 GO:0003700
Gso5g1048 495 PANTHER WRKY TRANSCRIPTION FACTOR 9-RELATED 12 480 - -
Gso5g1048 495 Coils Coil 27 47 - -
Gso5g1048 495 MobiDBLite consensus disorder prediction 475 495 - -
Gso5g1048 495 Pfam WRKY DNA -binding domain 251 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso5g1048 495 Gene3D WRKY domain 235 312 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso5g1048 495 ProSiteProfiles WRKY domain profile. 245 311 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1048 Gso-Chr5 33577486 33580623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1048 34 373 WRKY Transcription Factor Family AT1G68150 46.499 1.01e-81 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso5g1048 WRKY 1.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1048 - - gmx:100820209 926.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1048 5 33577486 33580623 Gso8g0648 8 5984377 5987493 GST