Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1032 ATGTCTGACGTGGAAGAGTTTCGTTGCTTCATTGGTGGCCTTGCATGGTCAACGTCTGATAGAAAGTTAAAGGATACATTTGAAAAGTTTGGCAAGCTTATTGAGGCAAAGGTGGTTGTTGACAAGTTCTCTGGGCGTTCTCGTGGTTTTGGATTTGTCACATTTGATGACAAGAAAGCAATGGACGAGGCTATTGATGCTATGAATGGGATAGATTTAGACGGGCGAACTATTACTGTTGATAGAGCTCAGCCTCAACAAGGATCAACTAGAGATGATGGTGATCGTTACCGGGAGCGTGGTCGTGATCGTGATCGTAACCGAGATTATGGAGGTGGAGGTGGTCGAGGATCTAATGGTGGTGAATGCTTTAAGTGTGGAAAACCTGGTCATTTTGCTAGGGAATGCCCTGGTGAAGGGTCCAGGGGAGGAAGGTATGGTGGTAGGGAAAGTAGATATGGTGGAAGCAGTCGTGGTGGTTATGGACCGGATAGAAATGCAGATCGTTCTTCAGGGGGGCGCAGCAGGGATGGTGGTAGTCATGGGGATTCTGGAAGTGATCGATATTATCGTGATCGTTCAGGACCATATGAGCGGGAGCGACGGGGATCGGGAGGCTTTCGTTGA 627 0.4817 MSDVEEFRCFIGGLAWSTSDRKLKDTFEKFGKLIEAKVVVDKFSGRSRGFGFVTFDDKKAMDEAIDAMNGIDLDGRTITVDRAQPQQGSTRDDGDRYRERGRDRDRNRDYGGGGGRGSNGGECFKCGKPGHFARECPGEGSRGGRYGGRESRYGGSSRGGYGPDRNADRSSGGRSRDGGSHGDSGSDRYYRDRSGPYERERRGSGGFR* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1032 208 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Gso5g1032 208 Gene3D - 2 117 IPR012677 -
Gso5g1032 208 MobiDBLite consensus disorder prediction 169 208 - -
Gso5g1032 208 Pfam Zinc knuckle 122 137 IPR001878 GO:0003676|GO:0008270
Gso5g1032 208 PANTHER TRANSFORMER-2-RELATED 1 164 - -
Gso5g1032 208 SUPERFAMILY Retrovirus zinc finger-like domains 114 141 IPR036875 GO:0003676|GO:0008270
Gso5g1032 208 SUPERFAMILY RNA-binding domain, RBD 4 117 IPR035979 GO:0003676
Gso5g1032 208 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Gso5g1032 208 MobiDBLite consensus disorder prediction 77 208 - -
Gso5g1032 208 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 164 - -
Gso5g1032 208 Gene3D - 118 176 - -
Gso5g1032 208 MobiDBLite consensus disorder prediction 88 111 - -
Gso5g1032 208 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Gso5g1032 208 ProSiteProfiles Zinc finger CCHC-type profile. 123 137 IPR001878 GO:0003676|GO:0008270
Gso5g1032 208 SMART rrm1_1 8 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1032 Gso-Chr5 33281144 33283583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1032 10 93 Eukaryotic Initiation Factors Gene Family AT1G22760 34.524 1.32e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1032 - - gmx:100815224 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1032 5 33281144 33283583 Gso8g0629 8 5826293 5830447 GST