Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1028 ATGGTGAACGTTCCGAAGACAAAGAAGACCTACTGCAAGAGCAAGGAGTGCAGGAAGCACACGCTCCACAAGGTCACCCAATACAAGAAGGGCAAGGACAGCATCGCCGCTCAGGGAAAACGCCGTTATGACCGCAAACAGTCCGGTTACGGTGGCCAGACCAAGCCCGTTTTCCACAAAAAGGCGAAAACCACCAAGAAAATTGTGTTGAGGCTCCAGTGCCAAGGATGCAAGCATGTCTCGCAGCACGCTATCAAGAGGTGCAAGCACTTTGAGATCGGTGGTGACAAGAAGGGAAAAGGAACATCTCTCTTCTAG 318 0.5157 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1028 105 Pfam Ribosomal protein L44 19 94 IPR000552 GO:0003735|GO:0005840|GO:0006412
Gso5g1028 105 PANTHER 60S RIBOSOMAL PROTEIN L44-LIKE 2 105 - -
Gso5g1028 105 MobiDBLite consensus disorder prediction 28 56 - -
Gso5g1028 105 SUPERFAMILY Zn-binding ribosomal proteins 2 94 IPR011332 GO:0006412
Gso5g1028 105 MobiDBLite consensus disorder prediction 28 48 - -
Gso5g1028 105 Gene3D - 1 105 - -
Gso5g1028 105 PANTHER 60S RIBOSOMAL PROTEIN L36A/L44 2 105 IPR000552 GO:0003735|GO:0005840|GO:0006412
Gso5g1028 105 ProSitePatterns Ribosomal protein L44e signature. 63 74 IPR000552 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1028 Gso-Chr5 33255177 33256225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1028 1 105 Cytoplasmic Ribosomal Protein Gene Family AT3G23390 91.429 4.48e-67 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1028 K02929 - gmx:100795041 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1028 5 33255177 33256225 Gso8g0627 8 5809138 5810031 GST
Gso5g1028 5 33255177 33256225 Gso15g0438 15 3997113 3998162 PCT
Gso5g1028 5 33255177 33256225 Gso8g1503 8 14654513 14655543 PCT
Gso15g0438 15 3997113 3998162 Gso5g1028 5 33255177 33256225 PCT
Gso8g1503 8 14654513 14655543 Gso5g1028 5 33255177 33256225 PCT