Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1017 ATGCAAGTGCTGAATTTAAGGAGAGAATTTGAGCTTCAAAGGATGCAAGAGTCAGAGACAATCAAAGAATACTCAAACAAATTATTGGGTATTGCCAACAAGATAAAGTTGTTGGGAAGTGATTTTGCTGATTCGAGAATTGTAGAGAAAATTTTGGTAACGGTGCCGGAGAGGTATGAAGCATCTATAGCTTCATTGGAGAACACAAAGGATCTGTCGAAAATCACATTGGCAGAAGTGCTACACGCCCTGCAAGCTCAAGAGCAGCGAAGGTTGATGAGGCAAGATCGTGTTGTCGAAGGTGCTTTGCCCGCCAAACATCATGAAGTTGATGAAAACAAAAAGGATTTTTTCAAGAAGAACCAACCAGCAAGCAGCGAAAATAGTGCAAACAACCAAAACAAAGGTAAGGATAAAAAGAAAAATTATCCACCTTGTCAACATTGTGGCAAAAAAGGTCATGCACCTTTCAAATGTTGGAGGAGACCAGATGCAAAATGTAACAAGTGCAACCAGATAGGGCATGAAGCGGTGATCTGCCCCAACAAAAATCACCATGATGAGGGAGCTCAGATTGCTAATCAAGAAGAAGAGGACCAACTATCGTCTAAAATCACAACCACCACTGTTAAGGGGCTTGCTTATTTGCACGATCATTGCGACCCAAAGATTATTCATCGTGATTTCGAAGCTGCTAATATATTGTTGGATGAGGACTTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAGCTTATGGATTACAAAAATACTCATGTTACTGCTGCTGTACGTGGTACGCTTGGCCATATAGCACCAGAGTATCTCGCGACTGGAAAGTCTTCAGAAAAGACAGTTGTTTTTGGATATGGTGAAAATACTAGTGAAAGACAAGAAGTTGAAGATACTGGTAGCTCCCCTTTGGAAAGACCAACGATGTCTGAGGTGGTGAGAATGCTAGAGGGTGATGGTTTGGCAGAAAAGTGGGATCAGTGGGGGAAGAAAGAGGATATGATCCAACAAAATTTCAGCCCCTTTAATCTCTACACTCCTTGTGACTCAACTTCAAATATTCAACTGTCAGGTCCTAGATGA 1095 0.4137 MQVLNLRREFELQRMQESETIKEYSNKLLGIANKIKLLGSDFADSRIVEKILVTVPERYEASIASLENTKDLSKITLAEVLHALQAQEQRRLMRQDRVVEGALPAKHHEVDENKKDFFKKNQPASSENSANNQNKGKDKKKNYPPCQHCGKKGHAPFKCWRRPDAKCNKCNQIGHEAVICPNKNHHDEGAQIANQEEEDQLSSKITTTTVKGLAYLHDHCDPKIIHRDFEAANILLDEDFEAVVGDFGLAKLMDYKNTHVTAAVRGTLGHIAPEYLATGKSSEKTVVFGYGENTSERQEVEDTGSSPLERPTMSEVVRMLEGDGLAEKWDQWGKKEDMIQQNFSPFNLYTPCDSTSNIQLSGPR* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1017 364 PANTHER - 129 202 - -
Gso5g1017 364 PANTHER - 2 123 - -
Gso5g1017 364 MobiDBLite consensus disorder prediction 103 142 - -
Gso5g1017 364 Pfam Protein kinase domain 198 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1017 364 SMART c2hcfinal6 166 182 IPR001878 GO:0003676|GO:0008270
Gso5g1017 364 SMART c2hcfinal6 145 161 IPR001878 GO:0003676|GO:0008270
Gso5g1017 364 SUPERFAMILY Retrovirus zinc finger-like domains 137 184 IPR036875 GO:0003676|GO:0008270
Gso5g1017 364 MobiDBLite consensus disorder prediction 103 121 - -
Gso5g1017 364 Pfam gag-polypeptide of LTR copia-type 4 92 - -
Gso5g1017 364 SUPERFAMILY Protein kinase-like (PK-like) 204 320 IPR011009 -
Gso5g1017 364 Gene3D Transferase(Phosphotransferase) domain 1 191 292 - -
Gso5g1017 364 Coils Coil 7 27 - -
Gso5g1017 364 PANTHER - 2 123 - -
Gso5g1017 364 PANTHER - 129 202 - -
Gso5g1017 364 Gene3D - 120 190 - -
Gso5g1017 364 ProSiteProfiles Protein kinase domain profile. 1 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1017 Gso-Chr5 33145369 33148390 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1017 204 364 Receptor kinase-like Gene Family AT1G71830 51.584 1.13e-58 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gso5g1017 Pkinase 6.5e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1017 - - gsj:114411312 733.021