Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1016 ATGGCCAACATGGAGCGAGTGATTTCAGATTTCATGTCTTGGTTTCCTCTTTGGGCAATTTTGGTGCTTGACTTGCTGCTCAAGGTTTCTGGCAACACAGAAGGTGATGCTCTGACTGCATTGAAGAACAGTGTGAGTGATCCTAACAATGTTCTTCAAAGTTGGGATTCTACACTTGTCGATCCTTGCACATGGTTTCATGTTACTTGCAACAATGAAAATAGCGTGACCCGTGTTGATCTTGGAAATGCAAACCTTTCCGGTCAACTTGTTCCACAGCTTGGCCAACTCCCAAATTTGCAATACTTGGAACTTTATAGTAATAATATAACTGGGAAAATCCCAGATGAGCTTGGAAGTTTGAGAAACTTGGTGAGCTTGGATCTTTACTCGAACAACATTACTGGTCCCATTTCAGACAACTTGGCCAACCTTAAAAAACTACGTTTCCTGCGTCTGAACAATAACAGCTTGTCAGGAAAGATCCCTGTTCGTTTGACCACTGTTGATTCACTTCAAGTTCTTGATTTATCGAACAACAACTTAACTGGAGACATCCCAATCAATGGTTCTTTTTCAAGTTTTACTCCCATCAGTTTTAGGAATAATCCTTCATTGAATAATAACACCCTTGTACCTCCACCGGCTGTCACACCGCCACAAAGTTCTTCAGGTAATGGTAACCGTGCTATTGTAATCATTGCTGGAGGAGTTGCTGTGGGTGCTGCACTGTTGTTTGCAGCTCCAGTAATTGTACTTGTTTATTGGAAAAGAAGGAAGCCAAGGGACTTTTTCTTTGATGTTGCAGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAGGTTTTCACTGCGTGAACTGCAAGTTGCAACAGATACCTTTAATAACAAAAACATTCTTGGTAAAGGTGGATTTGGCAAGGTTTATAAAGGACGCTTAACAAATGGTGATCTTGTAGCAGTAAAAAGACTTAAAGAGGAACGAACTCAGGGTGGGGAGATGCAATTTCAAACTGAAGTGGAAATGATCAGCATGGCTGTCCATCGAAATTTGCTTCGCCTGCGTGGTTTCTGTATGACACCTACTGAACGCTTGCTTGTGTATCCTTTCATGTCTAATGGAAGTGTAGCTTCATGTTTACGAGATCGTCCGGAATCACAACCACCACTTGAATGGCCAAAACGGAAGAATATTGCTCTAGGAGCTGCTAGGGGGCTTGCTTATTTGCACGATCATTGCGACCCAAAGATTATTCATCGTGATGTCAAAGCTGCTAACATATTGTTAGATGATGACTTTGAAGCAGTTGTAGGAGATTTTGGTTTAGCAAAACTTATGGATTATAAGGATACTCATGTTACTACCGCAGTACGCGGTACAATTGGCCATATAGCACCAGAGTACCTCTCAACTGGAAAGTCTTCAGAGAAAACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTTGATTTAGCACGACTCGCCAATGATGATGATGTCATGTTGCTTGACTGGGTGAAAGCACTTCTGAAAGACAAGAGGTTGGAGACACTGGTGGATACAGATTTAGAGGGAAAATATGAGGAGGCGGAAGTAGAGGAGTTAATCCAAGTGGCCTTGCTATGCACACAAAGCTCCCCTATGGAAAGACCAAAGATGTCTGAGGTGGTGAGAATGCTAGATGGTGAAGGTTTGGCAGAAAAATGGGATAAATGGTGGCAGAAAGAGGATATGATCCAACCAAACTTCGACCCCTCCAATCTCCACAATGGTTATTGGCGGCCATTATTAGACTCAACTTCAAATATTGCACCAGATGAACTGTCAGGTCCTAGATGA 1869 0.4232 MANMERVISDFMSWFPLWAILVLDLLLKVSGNTEGDALTALKNSVSDPNNVLQSWDSTLVDPCTWFHVTCNNENSVTRVDLGNANLSGQLVPQLGQLPNLQYLELYSNNITGKIPDELGSLRNLVSLDLYSNNITGPISDNLANLKKLRFLRLNNNSLSGKIPVRLTTVDSLQVLDLSNNNLTGDIPINGSFSSFTPISFRNNPSLNNNTLVPPPAVTPPQSSSGNGNRAIVIIAGGVAVGAALLFAAPVIVLVYWKRRKPRDFFFDVAAEEDPEVHLGQLKRFSLRELQVATDTFNNKNILGKGGFGKVYKGRLTNGDLVAVKRLKEERTQGGEMQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMSNGSVASCLRDRPESQPPLEWPKRKNIALGAARGLAYLHDHCDPKIIHRDVKAANILLDDDFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKALLKDKRLETLVDTDLEGKYEEAEVEELIQVALLCTQSSPMERPKMSEVVRMLDGEGLAEKWDKWWQKEDMIQPNFDPSNLHNGYWRPLLDSTSNIAPDELSGPR* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1016 622 SUPERFAMILY Protein kinase-like (PK-like) 276 570 IPR011009 -
Gso5g1016 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Gso5g1016 622 SMART serkin_6 296 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1016 622 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Gso5g1016 622 Gene3D Ribonuclease Inhibitor 31 213 IPR032675 -
Gso5g1016 622 Gene3D Transferase(Phosphotransferase) domain 1 373 590 - -
Gso5g1016 622 Pfam Protein kinase domain 297 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1016 622 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
Gso5g1016 622 ProSiteProfiles Protein kinase domain profile. 296 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1016 622 Gene3D Phosphorylase Kinase; domain 1 265 372 - -
Gso5g1016 622 ProSiteProfiles Leucine-rich repeat profile. 171 193 IPR001611 GO:0005515
Gso5g1016 622 Pfam Leucine rich repeat 98 158 IPR001611 GO:0005515
Gso5g1016 622 SUPERFAMILY L domain-like 33 209 - -
Gso5g1016 622 PANTHER BNAA08G11770D PROTEIN 13 622 IPR031048 GO:0004675|GO:0005102|GO:0006468
Gso5g1016 622 Pfam Leucine Rich Repeat 171 187 IPR001611 GO:0005515
Gso5g1016 622 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1016 Gso-Chr5 33137308 33144535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1016 17 622 Receptor kinase-like Gene Family AT4G33430 72.783 0.0 910
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gso5g1016 Pkinase 4.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1016 K13416 - gmx:100804180 1207.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1016 5 33137308 33144535 Gso15g0444 15 4051150 4058081 PCT
Gso5g1016 5 33137308 33144535 Gso8g1498 8 14579599 14586687 PCT
Gso15g0444 15 4051150 4058081 Gso5g1016 5 33137308 33144535 PCT
Gso8g1498 8 14579599 14586687 Gso5g1016 5 33137308 33144535 PCT