Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0999 ATGTCTCACTTCGGACGTTCGGGTCCCCCAGACATTTCCGACACTTACTCTCTTCTCGTTCTGAACATCACCTTCCGTACCACCGCCGACGACCTATTCCCTCTCTTCGACAAGTATGGGAAGGTCGTCGACATCTTCATCCCCAAGGATCGAAGGACTGGTGAATCGAGGGGTTTTGCGTTCGTGCGTTACAAGTATGCTGATGAGGCTCAGAAGGCCGTTGAGAGGCTCGACGGGAGAATGGTTGATGGTCGCGAAATAACGGTCCAGTTTGCGAAATATGGGCCTAATGCTGAAAGGATTTTTTCAAATTGCAGTCACAAAGGAAGGATTATTGAAACATCCCCAAGATCAAGGCGATCAAGGAGCCGTAGCCCAAGGAAAAGGCATCGTGATGATTACAGAGACAGAGATTATAGGAGAAGAAGTCGCAGCAGAAGTTATGATAGGTATGAACGTGACAGGCATCGTGGGAGAGACAAAGATTATCGTCGCAGAAGTAGGAGCCGTAGTGCCAGTCTTGATTACAAGGGTCGTGGTAGAGGACGCTATGATGATGAGCGTAATAGTAGAAGCCGGAGCAGATCAGTTGATAGCCGCTCCCCTGCACGACGCAGTCCTAGTCCTCGAAGGAGTCCCTCCCCTCAGAGGAGCACTTCCCCTCAAAGGAGTACTTCCCCTAGGAAGAGTCCACGGGGTGAAAGTCCTGCAAATCGTAGCCGTGAGGAACGTTCCCCTACCCCTCGCAGTGTCTCACCACGCGGTCGCCCTGATGCTTCACGAAGTCCTTCCCCTCGAAATTCAAACGGGGATGAATAA 819 0.514 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVERLDGRMVDGREITVQFAKYGPNAERIFSNCSHKGRIIETSPRSRRSRSRSPRKRHRDDYRDRDYRRRSRSRSYDRYERDRHRGRDKDYRRRSRSRSASLDYKGRGRGRYDDERNSRSRSRSVDSRSPARRSPSPRRSPSPQRSTSPQRSTSPRKSPRGESPANRSREERSPTPRSVSPRGRPDASRSPSPRNSNGDE* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0999 272 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 272 - -
Gso5g0999 272 MobiDBLite consensus disorder prediction 201 233 - -
Gso5g0999 272 MobiDBLite consensus disorder prediction 105 272 - -
Gso5g0999 272 MobiDBLite consensus disorder prediction 129 200 - -
Gso5g0999 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Gso5g0999 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Gso5g0999 272 SUPERFAMILY RNA-binding domain, RBD 9 109 IPR035979 GO:0003676
Gso5g0999 272 SMART rrm2_1 17 90 IPR003954 GO:0003676
Gso5g0999 272 MobiDBLite consensus disorder prediction 234 249 - -
Gso5g0999 272 Gene3D - 4 100 IPR012677 -
Gso5g0999 272 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 272 - -
Gso5g0999 272 SMART rrm1_1 17 90 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0999 Gso-Chr5 32949899 32952809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0999 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 1.11e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0999 K12891 - gmx:100804370 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0999 5 32949899 32952809 Gso8g0601 8 5603953 5607042 GST