Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0997 ATGGATTCTGCGTTCTCCATCACCACCAAGGCGCACGTGGCGCTTTTCAGAGTGCTCCACCGTCATTTCCACGGAGCTCCTAAACGCGTCTTGCTTCGCTGCAACCTCAAACGCCTTATTGCTTCCTACAGTAGCAGCAACTGCTGCCGCATTCCGTGTTCTTTCGCCTCCGCACCGTCGCCTTCCTCGCTCGGATCCTTCCGCGGACTACTCCCGCGAACGCCGCCGTGCAGTCCGCGCTGCATTTCCTTTGCTTCTCCTGCCGGCGGTGGAAATGGCGGCGCTGGAACCGGAGACGGTGGTGGAGGTGGCGGTTCTGGCGGGGAGTCCGGAGATGTTAATCTCAAACTGGTTGGAGACGCGTCTCAGGAGCTTTCGGCACTTTCACCCGATGTTATCATTCTCGATGTTTCGGGAATGGTATGCGGGGGATGTGCGGCTACTGTGAAAAGGATACTGGAAAGTCAACCTCAAGTGTCATCTGCTAGTGTAAATTTAACAACAGAGACAGCAATAGTCTGGCCTGTATCTGAAGCAAAAAATGCACCAAATTGGCAAAAGCAATTAGGGGAGGCACTTGCAGAGCATTTAACTAGTTGTGGCTATAATTCTAGCCTTCGAGACTCAACAAGAGACAACTTCCTCCAAATTTTTGAAAGGAAGATGGAGGAAAGACATAGACAATTAAGAGAAAGTGGTCGTGAGCTAGCTGTTTCTTGGGCTCTATGTGCTGTCTGTCTTGTTGGCCATTTCTCTCATTTCTTTGCAGCAAAGGCACCATGGATCCATGTATTTCATTCCATTGGGTTTCATCTTTCCTTGTCTTTGTTTACGTTGCTTGGTCCTGGCCGCCAACTTATCCTTGATGGCTTAAAAAGCCTTCTTAAAAGGACGCCAAATATGAACACCTTAGTTGGTCTCGGGGCTTTATCATCATTTACAGTCAGTTCATTTGCTGCCTTGCTGCCAAGATTGGGTTGGAAGGCCTTCTTCGAGGAACCAATTATGCTAATTGCATTTGTTTTGTTAGGAAGGAATCTTGAACAGAGAGCTAAGATTAAAGCAACCAGTGATATGACAGGACTTCTTAGTTTATTACCACCAAAAGCTCGCCTTCTTTTGAACAATAGGGAAACAGAGGTTGGCTCGGTTGTTGAAGTTCCTTCTGACAGTCTTTCTGTTGGAGACCAAATTATTGTATTACCTGGAGATCGTATTCCAGCTGATGGAATTGTGAGATCTGGTAGAAGCACTGTAGACGAATCAAGTTTTACTGGTGAACCACTGCCTGTAACAAAAGTAGCCGGGAGTGAGGTAGCAGCTGGGAGTATAAATCTTAATGGAACTCTTACAATGGAAGTGCAGAGACCAGGTGGTGAGACTGCTATGGCAAACATTGTTCGTCTAGTTGAAGAGGCACAAAGTAGGGAAGCTCCTGTACAGCGGTTGGCTGACAAGGTGGCTGGACACTTCACTTATGGAGTGATGGCAGCCTCTGCTGCCACATTCACATTCTGGAGTCTTTATGGCACACACATTTTACCTCCTGCTTTATATCAAGGAAGTGCAGTTTCACTGGCTTTGCAGCTTGCTTGCAGTGTTCTGGTTGTTGCTTGTCCATGTGCACTTGGGTTAGCCACACCTACTGCAGTGCTGGTTGGAACATCTTTGGGAGCTAAGAGAGGATTACTTCTGCGTGGTGGAAACATTCTAGAGAAGTTTGCCATGGTAAACACCATTGTGTTTGACAAAACAGGGACCCTCACGGTTGGTAGACCTGTTGTGACAAACATTGTCATTCCTACTTGCATAAAAAATGCAATTTCAAGCCAAACTGAAGAAAATGCTTTGTCTGATGTTGAAGTTCTAAGGTTAGCAGCTGCAGTGGAATCAAATTCAGTACATCCAGTTGGTCAAGCGATTGTCAATGCTGCTCAGGCTGCTAATTGTCATGATGCTAAGGTAAAAGATGGAACATTCCTGGAAGAACCTGGATCTGGTGCTGTGGCAACAATTGATAACAAAAAGGTTTCTGTTGGGACGTTGGAATGGATTACCAGGCATGGAGTTATTAACAGTATACATCAAGAAGTGGAGAAGAGTAATAACCAATCCTTTGTCTATGTTGGAGTTGATGATACTTTAGCTGGCCTAATTTATTTTGAAGATGAGATAAGGGAAGATGCAAGAGACGTTGTTGACAGATTGTCAAAGCAAAATATAGGTGTATACATGCTATCAGGAGACAAGAGGAATGCTGCTGAGCATGTTGCTTCCCTTGTTGGAATTCCCAAAGAGAAGGTGCTATCTCAAGTAAAACCAGATGAGAAAAAGAAGTTCATAAATGAACTACAGAAAGATAAGAACATTGTAGCAATGGTTGGTGATGGAATTAACGATGCAGCTGCCCTGGCTTCTTCACATGTTGGTATTGCATTAGGTGGAGGTGTTGGGGCTGCTAGTGAGGTGTCTTCTATTGTATTAATGCGCAATCAGCTCTCACAGCTAGTTGATGCCTTGGAGCTTAGCAGGCTGACCATGAATACTATAAAACAAAATCTTTGGTGGGCTTTCATATACAACATTGTAGGAATTCCAATTGCAGCTGGAGTGTTATTTCCCATAAATGGGACTGTGCTGACTCCATCAATTGCAGGGGCTCTCATGGGGCTGAGTTCCATTGGCGTAATGACTAACTCATTGCTTTTGAGATTCAAATTTTCCTCAAAGCAGAAACAAATACATGGCACATCACCAAAGACCAAAATCCATGTGGATTCTGATCTGGCACAACAAAACCAGAAAACAAACCACCCTTATTAG 2823 0.4499 MDSAFSITTKAHVALFRVLHRHFHGAPKRVLLRCNLKRLIASYSSSNCCRIPCSFASAPSPSSLGSFRGLLPRTPPCSPRCISFASPAGGGNGGAGTGDGGGGGGSGGESGDVNLKLVGDASQELSALSPDVIILDVSGMVCGGCAATVKRILESQPQVSSASVNLTTETAIVWPVSEAKNAPNWQKQLGEALAEHLTSCGYNSSLRDSTRDNFLQIFERKMEERHRQLRESGRELAVSWALCAVCLVGHFSHFFAAKAPWIHVFHSIGFHLSLSLFTLLGPGRQLILDGLKSLLKRTPNMNTLVGLGALSSFTVSSFAALLPRLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMTGLLSLLPPKARLLLNNRETEVGSVVEVPSDSLSVGDQIIVLPGDRIPADGIVRSGRSTVDESSFTGEPLPVTKVAGSEVAAGSINLNGTLTMEVQRPGGETAMANIVRLVEEAQSREAPVQRLADKVAGHFTYGVMAASAATFTFWSLYGTHILPPALYQGSAVSLALQLACSVLVVACPCALGLATPTAVLVGTSLGAKRGLLLRGGNILEKFAMVNTIVFDKTGTLTVGRPVVTNIVIPTCIKNAISSQTEENALSDVEVLRLAAAVESNSVHPVGQAIVNAAQAANCHDAKVKDGTFLEEPGSGAVATIDNKKVSVGTLEWITRHGVINSIHQEVEKSNNQSFVYVGVDDTLAGLIYFEDEIREDARDVVDRLSKQNIGVYMLSGDKRNAAEHVASLVGIPKEKVLSQVKPDEKKKFINELQKDKNIVAMVGDGINDAAALASSHVGIALGGGVGAASEVSSIVLMRNQLSQLVDALELSRLTMNTIKQNLWWAFIYNIVGIPIAAGVLFPINGTVLTPSIAGALMGLSSIGVMTNSLLLRFKFSSKQKQIHGTSPKTKIHVDSDLAQQNQKTNHPY* 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0997 940 Pfam Heavy-metal-associated domain 135 202 IPR006121 GO:0046872
Gso5g0997 940 Pfam E1-E2 ATPase 365 561 - -
Gso5g0997 940 ProSitePatterns E1-E2 ATPases phosphorylation site. 583 589 IPR018303 -
Gso5g0997 940 Gene3D - 572 844 IPR023214 -
Gso5g0997 940 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 627 873 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso5g0997 940 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 375 602 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso5g0997 940 SFLD C1.7: P-type atpase like 564 844 - -
Gso5g0997 940 PANTHER ATP7, ISOFORM B 120 905 - -
Gso5g0997 940 SUPERFAMILY Calcium ATPase, transduction domain A 382 470 IPR008250 -
Gso5g0997 940 TIGRFAM ATPase-IB1_Cu: copper-translocating P-type ATPase 283 904 - -
Gso5g0997 940 MobiDBLite consensus disorder prediction 916 940 - -
Gso5g0997 940 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 301 903 IPR027256 GO:0006812|GO:0016021|GO:0019829
Gso5g0997 940 ProSiteProfiles Heavy-metal-associated domain profile. 132 206 IPR006121 GO:0046872
Gso5g0997 940 Gene3D - 351 474 - -
Gso5g0997 940 SUPERFAMILY HMA, heavy metal-associated domain 133 204 IPR036163 GO:0046872
Gso5g0997 940 Gene3D - 592 725 IPR023299 GO:0000166
Gso5g0997 940 SUPERFAMILY Calcium ATPase, transmembrane domain M 332 880 IPR023298 -
Gso5g0997 940 MobiDBLite consensus disorder prediction 92 111 - -
Gso5g0997 940 PRINTS Copper-transporting ATPase signature 286 305 - -
Gso5g0997 940 PRINTS Copper-transporting ATPase signature 334 353 - -
Gso5g0997 940 PRINTS Copper-transporting ATPase signature 564 579 - -
Gso5g0997 940 PRINTS Copper-transporting ATPase signature 771 788 - -
Gso5g0997 940 CDD P-type_ATPase_HM 236 902 - -
Gso5g0997 940 SFLD p-type atpase 564 844 IPR044492 -
Gso5g0997 940 SUPERFAMILY HAD-like 579 900 IPR036412 -
Gso5g0997 940 ProSitePatterns Heavy-metal-associated domain. 137 166 IPR017969 GO:0046872
Gso5g0997 940 CDD HMA 135 202 IPR006121 GO:0046872
Gso5g0997 940 Pfam haloacid dehalogenase-like hydrolase 577 806 - -
Gso5g0997 940 PRINTS P-type cation-transporting ATPase superfamily signature 420 434 - -
Gso5g0997 940 PRINTS P-type cation-transporting ATPase superfamily signature 581 595 - -
Gso5g0997 940 PRINTS P-type cation-transporting ATPase superfamily signature 717 728 - -
Gso5g0997 940 PRINTS P-type cation-transporting ATPase superfamily signature 739 749 - -
Gso5g0997 940 PRINTS P-type cation-transporting ATPase superfamily signature 794 813 - -
Gso5g0997 940 PRINTS P-type cation-transporting ATPase superfamily signature 817 829 - -
Gso5g0997 940 Gene3D - 132 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0997 Gso-Chr5 32902361 32940688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0997 283 904 Primary Pumps ATPases AT1G63440 39.623 6.24e-125 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0997 K17686 - gmx:100796210 1757.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0997 5 32902361 32940688 Gso8g0599 8 5575008 5593985 GST