Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0996 ATGGCGGAGCGTTCGTGTTTCGGATTGGGACCTCGATTAGATCTTCAGCAATTACAACTTGAAGCCCAGCATAGGTGGTTGCGCCCTGCAGAAATATGTGAAATTCTTCGCAATTATCAGATGTTTCAAATCACATCAGAACCACCTAACGGGCCACCAAGTGGTTCCCTTTTTCTATTTGATCGGAAGGTTTTAAGGTACTTTAGAAAAGATGGACATAATTGGAGAAAGAAAAAAGATGGAAAGACTGTGAAGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGACGTGTTACACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAACCGGATATGATGCATATAGTATTTGTTCACTACTTGGATGTTAAGGTTAACAAAACCAATGTTGGTGGAAAAACATATTCTGACGAGGTTACATCAGATTCCCAGAAGAGCAGTTCTTTGTCATCTGGCTTTCCCAGAAATTATGGTAGTGTGCCTTCTGGAAGTACAGATTCCATGAGCCCAACAAGCACTTTGACATCTTTATGTGAAGATGCTGATTCAGAGGATATTCATCAAGCAAGTTCAGGATTACACTCCTATCGTGAATCACAAAATCTGGGGAATGATCGTCCGATGGATAAGATTGATGCTCGTTCAAATAGTTCATATCCTATGCATCCGTTTTCAGGTGATCATGGGCAGTTACCAGTTTCTGGAGCAGAATATATCCCACATGTTCTGGGGGATAAGTCTAGAGCTAGTGATACTACTTACATTGAGGGTCAGAGAGCACAGGGCATTGCATCTTGGGACAATACCATGGAACAGTCTGCAGGAGAGTATGCTGATCCTTCTCTTGTATCATCTACAACCATTCCATCAAGTGCAGTGGGAAACATCCTTGAAGAAAACCATACTGTTCCTGGCAAACTTTTAGGGCGTAAAAATGCCCTAACTGAAGAGGAAAGGGGCTCTCAGCCTGTCCAATCAAATTGGCAGATTCCTTTTGAAGACAATACAGGAGAATTGCCTAATTGGGGCTTCACCCAATCATTGGGTTTGGAATTTGGATCTGATTATGGTGCTAGTTTACTGGGGGATGTAACTAATAATGCAGGCCCAGAAATTGTTCCTGAGCTGTTCACTTTTAATGGTGAGTTAAAAGAGCAGTCTGTGCACCAAAACTTCTCAAAGCTGTATACACATGGGCAATCTCAACCTACACTGAAATCCAATTCTGAATATGAAGTTCCTGGTGAAGCAAGTATCAATTATGCCTTGACCATGAGGCGTGGATTATTGGATGGAGAGGAGAGCCTCAAGAAGGTTGATAGTTTCTCTAGGTGGATGACTAAAGAATTTGCAGGTGTGGATGATCTGCATATGCAGTCTTCCCCTGGTATTTCATGGAGCACAGATGAGTGTGGGGATGTGATAGATGATACCTCATTGAATCTGTCCCTGTCTCAAGACCAGCTGTTTAGCATAAATGATTTTTCTCCTAAATGGGCTTATGCTGAATCAGAAATTGAGGTGTTGATTGTTGGAACATTTTTGAAGAGTCAACCTGTGGTGGCAAAATGTAACTGGTCCTGTATGTTTGGGGAAGTGGAGGTTCCTGCTGAGGTTTTAGCTGATGGAATTCTGTGCTGTCAAGCTCCACCTCATAAGATTGGACGGGTTCCCTTCTATGTAACATGTTCCAATAGGTTTGCTTGTAGTGAAGTTCGGGAATTTGAGTACAGAGAGGGCTTTGATAGAAATATACAATTTGCAGATTGTTTTAACAATTCAACTGAAATGGTGCTTCATTTGCGACTGGTGGGGTTACTTTCTTTAAACTCAGTACGCACTTCAAATCAAGTGTTTGAGGGTGATATGGATAAAAGAAGCTTAATATTCAAGCTTATTTCACTGAAAGAGGAAGAGGAATATTCAAGTAAGGAAGAGACAACTGCAGAGATGGATATATCAAAACACAAGTTGAAGGAGCTTATGTTTCACAAGCAGGTTAAGGAGAAGTTGTACTCATGGCTTCTTCACAAAGTTACTGAAACTGGTAAAGGGCCTCTTGTATTAGATGAAGAAGGGCAAGGCGTGTTACACTTAATTGCTGCTCTTGGTTATGATTGGGCCATAAATCCAATCATAACTGCTGGAGTCAATATCAACTTCCGTGATGTGAATGGATGGACAGCTCTACACTGGGCTGCATTCTGTGGCCGAGAGCGAACAGTTGCTGTCCTTGTCTCCATGGGTGCAGCAGCTGGAGCATGGACAGATCCATGTCCAGAATTTCCTTCGGGTAGATCACCTGCAGATCTTGCTTCTAGCAAAGGCCATAAAGGAATCTCTGGTTTTCTTGCTGAGTCATTATTAACTGGCCACCTTGAATCACTCACAATGGATGAAAATAAAGATGGTAGGAAAGAAACTTCAGGAACGAAAGTAGTGCAAACAGCTTCAGAGCGAACTGCGACACCTGTGCTTTATGGTGATATACCAGATGCTATCTGCCTTAAGGATTCTCTTAATGCTGTCCGTAATGCTACACAAGCTGCTGATCGTATATATCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGCAGTTTGCTCAGTATGAAGATGATGAATTTGGATTGTCAGATCAACAAGCTCTTTCTCTCCTAGCTTCTAAGACGTGCAAATCTGGTCAAGGAGAGGGTTTAGCCAATGCTGCTGCAATACAAATACAGAAAAAGTTTCGTGGTTGGACGAAGAGAAAAGAATTCTTGATCATTCGCCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTCAGAAAGCAGTATAAACCAATCATTTGGTCCGTGGGAATCCTGGAAAAGGTCATATTACGCTGGAGACGCAAAGGCAGTGGCTTACGTGGATTTCGACCGGCTGCCCTGAACAAGGTCCCTGAACAACCAAGCGAATCTCCGAAAGAGGATGACTATGATTATCTCAAGGAAGGAAGGAAGCAGAGTGAAGTAAAGTTCAAAAAGGCCCTTTCACGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGGGCTCAATACCGGCGGGTGCTAAATGTAGTTGAGGACTTCCGTCAAACCAAGGGAGGTAATTTGAATTTGATAAATTCGGAAGAGACAGTTGATGGTGTGGAGGATTTGATTGATATTGACATGCTTTTAGATGATGAAAATTTCTTACCTATAGCATTCGATTGA 3267 0.423 MAERSCFGLGPRLDLQQLQLEAQHRWLRPAEICEILRNYQMFQITSEPPNGPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLDVKVNKTNVGGKTYSDEVTSDSQKSSSLSSGFPRNYGSVPSGSTDSMSPTSTLTSLCEDADSEDIHQASSGLHSYRESQNLGNDRPMDKIDARSNSSYPMHPFSGDHGQLPVSGAEYIPHVLGDKSRASDTTYIEGQRAQGIASWDNTMEQSAGEYADPSLVSSTTIPSSAVGNILEENHTVPGKLLGRKNALTEEERGSQPVQSNWQIPFEDNTGELPNWGFTQSLGLEFGSDYGASLLGDVTNNAGPEIVPELFTFNGELKEQSVHQNFSKLYTHGQSQPTLKSNSEYEVPGEASINYALTMRRGLLDGEESLKKVDSFSRWMTKEFAGVDDLHMQSSPGISWSTDECGDVIDDTSLNLSLSQDQLFSINDFSPKWAYAESEIEVLIVGTFLKSQPVVAKCNWSCMFGEVEVPAEVLADGILCCQAPPHKIGRVPFYVTCSNRFACSEVREFEYREGFDRNIQFADCFNNSTEMVLHLRLVGLLSLNSVRTSNQVFEGDMDKRSLIFKLISLKEEEEYSSKEETTAEMDISKHKLKELMFHKQVKEKLYSWLLHKVTETGKGPLVLDEEGQGVLHLIAALGYDWAINPIITAGVNINFRDVNGWTALHWAAFCGRERTVAVLVSMGAAAGAWTDPCPEFPSGRSPADLASSKGHKGISGFLAESLLTGHLESLTMDENKDGRKETSGTKVVQTASERTATPVLYGDIPDAICLKDSLNAVRNATQAADRIYQVFRMQSFQRKQFAQYEDDEFGLSDQQALSLLASKTCKSGQGEGLANAAAIQIQKKFRGWTKRKEFLIIRQRIVKIQAHVRGHQVRKQYKPIIWSVGILEKVILRWRRKGSGLRGFRPAALNKVPEQPSESPKEDDYDYLKEGRKQSEVKFKKALSRVKSMVQYPEARAQYRRVLNVVEDFRQTKGGNLNLINSEETVDGVEDLIDIDMLLDDENFLPIAFD* 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0996 1088 MobiDBLite consensus disorder prediction 203 245 - -
Gso5g0996 1088 SUPERFAMILY E set domains 504 590 IPR014756 -
Gso5g0996 1088 SUPERFAMILY Ankyrin repeat 694 798 IPR036770 -
Gso5g0996 1088 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Gso5g0996 1088 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Gso5g0996 1088 ProSiteProfiles IQ motif profile. 935 959 IPR000048 GO:0005515
Gso5g0996 1088 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1088 - -
Gso5g0996 1088 Gene3D Immunoglobulins 497 592 IPR013783 -
Gso5g0996 1088 SMART iq_5 911 933 IPR000048 GO:0005515
Gso5g0996 1088 SMART iq_5 934 956 IPR000048 GO:0005515
Gso5g0996 1088 ProSiteProfiles Ankyrin repeat region circular profile. 737 762 - -
Gso5g0996 1088 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1088 - -
Gso5g0996 1088 Gene3D - 912 958 - -
Gso5g0996 1088 ProSiteProfiles IQ motif profile. 912 941 IPR000048 GO:0005515
Gso5g0996 1088 MobiDBLite consensus disorder prediction 146 187 - -
Gso5g0996 1088 Pfam IPT/TIG domain 504 589 IPR002909 -
Gso5g0996 1088 Gene3D - 667 804 IPR036770 -
Gso5g0996 1088 ProSiteProfiles Ankyrin repeat profile. 737 769 IPR002110 GO:0005515
Gso5g0996 1088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 913 962 IPR027417 -
Gso5g0996 1088 SMART CG_1_2 18 136 IPR005559 GO:0003677
Gso5g0996 1088 Pfam IQ calmodulin-binding motif 914 932 IPR000048 GO:0005515
Gso5g0996 1088 Pfam IQ calmodulin-binding motif 937 956 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0996 Gso-Chr5 32865626 32876062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0996 1 1069 CAMTA Transcription Factor Family AT5G64220 52.925 0.0 1064
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gso5g0996 CG-1 1.3e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0996 K21596 - gmx:100795682 2167.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0996 5 32865626 32876062 Gso8g0596 8 5547970 5559441 GST
Gso5g0996 5 32865626 32876062 Gso15g0460 15 4204197 4215391 PCT
Gso5g0996 5 32865626 32876062 Gso8g1483 8 14428683 14440115 PCT
Gso15g0460 15 4204197 4215391 Gso5g0996 5 32865626 32876062 PCT
Gso8g1483 8 14428683 14440115 Gso5g0996 5 32865626 32876062 PCT