Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0974 ATGGCTCCCCTTTCATGCTACCTTGTTGTTTTTGCTCTTTCTCTTCTGAAACCTAGCTTTGTTTCCTCGTCTGCAGTGAGAGACCCTGAGCTAGTTGTACAAGAGGTACAAAGAAGCATCAATGCCTCTAGAAGAAACTTGGGTTATTTATCATGCGGAACAGGCAACCCCATTGACGATTGCTGGCGATGTGACCCCAATTGGGAGAACAACCGGCAAAGACTAGCTGATTGCTCCATTGGGTTCGGCAAGGACGCAATTGGAGGAAAAAATGGTCGAATCTACGTGGTCACCGACTCTGGCGACGACGACGCGGTGAACCCTAGGCCAGGAACCCTAAGGTACGCAGCCATACAAGACGAGCCATTGTGGATCATGTTCAAGAGGGACATGGTAATCACGCTAAAAGAAGAGCTTTTGGTGAATTCGTTCAAGACAATTGATGGAAGGGGTGCTAGTGTTCACATTGCTGGTGGGGGATGCATTACCATACACTATGTTAGTAACATTATTATTCATGGTATTCACATTCATGATTGCAAGCCCACGGGGAATACCAATATTAGAGACTCTCCACATCACTCTGGGTTTTGGACTCAATCAGACGGTGATGGTGTGTCCATCTTTAATTCGAAGCATATTTGGGTTGATCATTGCTCTTTGTCTAATTGTCGTGATGGTCTCATTGATGCCATTCATGGATCCACGGCCATCACCATCTCCAACAATTACATGACCCATCATGACAAGGTTATGCTTTTGGGGCACAGTGATTCGTACACTCAAGACAAGGACATGCAGGTCACTATAGCATTCAATCATTTTGGAGAAGGCCTTGTCCAAAGAATGCCAAGGTGTAGACACGGGTATTTCCATGTGGTGAACAACGACTACACCCACTGGGAAATGTACGCCATTGGTGGGAGTGCAAACCCTACCATCAACAGCCAAGGGAACAGGTTCCTTGCCCCAAATATCAGGTTCAGCAAGGAAGTGACCAAGCATGAGGATGCTCCACAGAGTGAGTGGATGGGTTGGAATTGGAGGTCAGAGGGTGACATGTTCTTGAATGGGGCATACTTCAGGCAATCTGGTGCTGGTGCTTCTTCTAGCTATGCTAGGGCTTCAAGTCTCAGTGCAAGACCATCTTCTCTTGTTGGCTCCATGACCACCACTGCTGGTGCGCTTAACTGTAGAAAGGGCAACCGTTGCTGA 1215 0.4733 MAPLSCYLVVFALSLLKPSFVSSSAVRDPELVVQEVQRSINASRRNLGYLSCGTGNPIDDCWRCDPNWENNRQRLADCSIGFGKDAIGGKNGRIYVVTDSGDDDAVNPRPGTLRYAAIQDEPLWIMFKRDMVITLKEELLVNSFKTIDGRGASVHIAGGGCITIHYVSNIIIHGIHIHDCKPTGNTNIRDSPHHSGFWTQSDGDGVSIFNSKHIWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPNIRFSKEVTKHEDAPQSEWMGWNWRSEGDMFLNGAYFRQSGAGASSSYARASSLSARPSSLVGSMTTTAGALNCRKGNRC* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0974 404 SUPERFAMILY Pectin lyase-like 39 399 IPR011050 -
Gso5g0974 404 PANTHER PECTATE LYASE 18-RELATED 4 401 IPR045032 GO:0030570
Gso5g0974 404 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Gso5g0974 404 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Gso5g0974 404 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Gso5g0974 404 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Gso5g0974 404 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Gso5g0974 404 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Gso5g0974 404 PRINTS Pollen allergen Amb family signature 346 370 IPR018082 -
Gso5g0974 404 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
Gso5g0974 404 SMART amb_all 130 327 IPR002022 -
Gso5g0974 404 Pfam Pectate lyase 137 321 IPR002022 -
Gso5g0974 404 PANTHER PECTATE LYASE 4 401 - -
Gso5g0974 404 Gene3D - 55 397 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0974 Gso-Chr5 32056684 32059597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0974 7 404 Polysaccharide Lyase AT5G63180 75.124 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0974 K01728 - gmx:100794814 823.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0974 5 32056684 32059597 Gso17g1234 17 12049249 12051766 GST
Gso5g0974 5 32056684 32059597 Gso19g0473 19 8900741 8904033 GST
Gso1g1748 1 54301360 54303438 Gso5g0974 5 32056684 32059597 PCT
Gso11g0326 11 2738232 2740341 Gso5g0974 5 32056684 32059597 PCT
Gso5g0974 5 32056684 32059597 Gso1g1748 1 54301360 54303438 PCT
Gso5g0974 5 32056684 32059597 Gso11g0326 11 2738232 2740341 PCT