Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0970 ATGGGAGGGGCAACACTACCACCAGGATTTCGTTTCCACCCAACTGATGAAGAATTAGTGGGATACTACCTTAAGAGAAAAGTGGAGGGGCTTGAAATTGAGCTTGAAGTTATCCCCGTGATTGATTTTTACAAATTTGATCCGTGGGAATTGCCGGAGAAGTCTTTCCTTCCAAAACGGGATTTGGAATGGTTTTTCTTCTGTCCAAGGGATCGCAAGTACCCAAATGGATCAAGAACAAATAGAGCCACCAAAGCTGGGTATTGGAAAGCCACTGGTAAAGACAGAAAGGTGGTGTGCCAGTCTAATCCATCCACTGTAGGGTACCGCAAGACCCTGGTTTTCTACCTTGGTAGGGCACCTATGGGGGATAGAACTGATTGGGTCATGCACGAATATCGCCTCTGCGATGATCTTGGCCAAGCCACACCATGTTTCCAGGGTGGTTTTGCTCTGTGCCGGGTTATTAAGAAGAATGTGAAGGCAAGTGTATCACAGGGAGAACACAAGGGCAAAAGGGCTGGAAGCAGTTCCATCAATGGGAGTGACACCTCAGTGAAATTCTCTAGTGAGCCATTCAGCAACTCTGGTGATGCTTCCTCTCAAGCAAGTCACCTGAATAAAGAGAGCCGTTATTCAAGCCCTATAACTTCTCCGTACAATGTGGCTCCAATGGGAGAGTACAACCAAGCTTCTGTGGAAACCAATCCTTCAAACTTCTGGATCTCTCCTGATATGATTCTTGATTCTTCAAAGGACTACCCTCCATTGCAAAATGCGGTGGCTGAATGTTTTCCACGGTATGACTTACCAAGTGTGATGGCACCATGGCAATCTTTGGAGCATCCAGAAACTTCATCTAGTTTGTCCTACTCAAATTTCAATGTGGAAGTTGATTTTGCTGATAGTCTCAGTCAAATTGGCTGCATGTCACCATACTCTAGACAATGGAATTCCATGGACTTTTATGGAAATGGGAATGTTCCTTATGATGGTTATGATCAAACTAATTCAATCTCATATCCTGAACTCTTTTAA 1038 0.4441 MGGATLPPGFRFHPTDEELVGYYLKRKVEGLEIELEVIPVIDFYKFDPWELPEKSFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCQSNPSTVGYRKTLVFYLGRAPMGDRTDWVMHEYRLCDDLGQATPCFQGGFALCRVIKKNVKASVSQGEHKGKRAGSSSINGSDTSVKFSSEPFSNSGDASSQASHLNKESRYSSPITSPYNVAPMGEYNQASVETNPSNFWISPDMILDSSKDYPPLQNAVAECFPRYDLPSVMAPWQSLEHPETSSSLSYSNFNVEVDFADSLSQIGCMSPYSRQWNSMDFYGNGNVPYDGYDQTNSISYPELF* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0970 345 MobiDBLite consensus disorder prediction 164 213 - -
Gso5g0970 345 Pfam No apical meristem (NAM) protein 7 135 IPR003441 GO:0003677|GO:0006355
Gso5g0970 345 ProSiteProfiles NAC domain profile. 6 158 IPR003441 GO:0003677|GO:0006355
Gso5g0970 345 Gene3D NAC domain 15 163 IPR036093 GO:0003677|GO:0006355
Gso5g0970 345 MobiDBLite consensus disorder prediction 170 213 - -
Gso5g0970 345 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
Gso5g0970 345 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 345 - -
Gso5g0970 345 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0970 Gso-Chr5 31879735 31882445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0970 1 345 NAC Transcription Factor Family AT4G17980 51.873 2.44e-110 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso5g0970 NAM 4.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0970 - - gmx:100792714 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0970 5 31879735 31882445 Gso17g1299 17 12952349 12955336 GST