Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0968 ATGGGTTGCACCATGAGGGAAAAGCATATCAGAGCTAATCGGAGACCCCGATCGGTGAAACCGGACTCGGATTCTTGCGACAAAGATGCCATATCCAAATCCATAGCGGAGTCTGGTCTTAAGCCCTTCAAATACCATCTGGATCTCAACGATTCTTCCCAGAGTCCGAATTCAAACCCTAATGTAGAGGAAACCGGGTGGGGTTACTGTACAGAGGAACAATTGGAAGAGATTCTGTTGAAAAACTTGGAATTTATATACAACGAAGCTGTGTCGAAGCTTGTTGCGTTGGGATATGATGGGGATGTTGCTGTTAAGGCCATACTGCGAAATGGGCATTGTTATGGTGGCATGGATGTGCTGACAAATATTTTGCACAATTCCTTGGCTTTTTTGAATACTAATAGTGATGGTGATGGTGGTGGTTATAGTAGTAATGGTGGGAATTTGCATGAGTCTGAGCCTGTGTTCTCTGATTTGAGGCAGTTGGAGGAGTACTCTTTGGCGGGTATGGTGTGTTTGTTGCAACAAGTGAGGCCTCATTTGAGCAAAGGGGATGCCATGTGGTGTTTGCTCATGAGTGATCTTCATGTCGGGAGGGCCAGTGCTATGGAGATTCCGGTGCCGGACAATGGGAGCACTGTGCCGGCTACCGGTGAGGGTGGTGCCAATTCGGCTGGTGTTATGGCGCCGGCTTTGTGTAGGTTTCATGGGGGGTGGGGATTTGGAAATGGGGGAGGCTTGGAATTTCCTGTGAACGGGATATTCTCTTGTGGTGCAGAGATGAATTTGCAGCTGCAACGAGACATTGAGTTTCCGAAGAGGTTAAATCTTTCTCCTTCGATGAAGTCCTTATTGAAGAGAAATGTTGCTATGTTTGCTGCTGGTTTTAGGGCGAACTCCAAGCAATTGCAGGCGCAGGTGAAGGCCTTTCCCGGCCGGAGTACTGCACCTAATTTGGATTCTTTGGATGTGTCCGGGACAGAAGTCCTGGCTGAGCAGTCCGGAGGAGATTCAGAGAATCTTGATAACCAAGATGCTGTGAATTCGGTGCTGAGTAAATTTCGTGATTTGAATCTTGATGAGAATTTGGACTTAGTTGCCGAAGATCAGAAGGATGAGGTGATAGTCTCTTTATTTCATCAGATTAGGGATCTTGAGAAACAGGTCAACGAGCGAAAAGATTGGGCTCATCAGAAGGCAATGCAGGCGGCAAGAAAGCTAAGCAGTGATTTGACTGAGCTCAAAATGTTGCGGATGGAAAGAGAGGAGACTCAAAAATTGAAGAAAGGGAAACCAGAACTTGAGGACACAACCATGAAGAGACTCTCAGAGATGGAGAATGCCTTGAGAAAGGCCAGTGGTCAACTGGACCTTGCGAATGCAGCTGTGAGGAGATTAGAAACTGAGAATGCAGAAATGAAAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCCGAGTCAGTGACAGCTTGCTTAGAAGTTGCAAAAAGGGAGAAAAAATGCTTAAAGAAACTTCTAGCTTGGGAAAAACAGAAAGCTAAGCTGCAGCAAGATATTTCTGATGAAAAAGAGAAGATATTGAAGACACAAGAAATATTGGTTCAGATTAGACAATGTCAAAAGGAAGCTGAGGTAAAGTGGAAGGAGGAGTTGAAGGCTAAAGAGGAAGCCCTAGCACTAGTTGAGGAGGAACGCCACTCTAAGGAAGCAGCCGAGTCTAACAATAAGAGGAAGCTCGAGACTTTGCGTCTGAAGATAGAGATAGATTTCCAGCGCCACAAAGATGATCTACTAAGACTTGAGCAGGAGCTTTCTCGCCTTAAAGCATCTGCTCAGTCTGCCGAGTTGCATAACCAATCAAGCACTTCACCTACAAGTGACTCGGAGGGTGCAAAGCCCCAAAGAGAGACCATTGCTAGGCTGCTTCAAGAATTGGATAATCTGGAGGACCTTTCGGAGAAAGAAGTAAACAGCAACAGAGAATGCATTGTATGTATGAAAGATGAAGTCTCCATTGTTTTCTTGCCGTGCGCACACCAAGTTATGTGTGCTAGTTGCAGTGATGAGTATGGAAGAAAAGGTAAGGCTATTTGTCCTTGCTGCAGGGTTCAAATCCAACAGAGAATCCGTGTATTTGGGGCAAGTTCCTAG 2154 0.4573 MGCTMREKHIRANRRPRSVKPDSDSCDKDAISKSIAESGLKPFKYHLDLNDSSQSPNSNPNVEETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDGDVAVKAILRNGHCYGGMDVLTNILHNSLAFLNTNSDGDGGGYSSNGGNLHESEPVFSDLRQLEEYSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASAMEIPVPDNGSTVPATGEGGANSAGVMAPALCRFHGGWGFGNGGGLEFPVNGIFSCGAEMNLQLQRDIEFPKRLNLSPSMKSLLKRNVAMFAAGFRANSKQLQAQVKAFPGRSTAPNLDSLDVSGTEVLAEQSGGDSENLDNQDAVNSVLSKFRDLNLDENLDLVAEDQKDEVIVSLFHQIRDLEKQVNERKDWAHQKAMQAARKLSSDLTELKMLRMEREETQKLKKGKPELEDTTMKRLSEMENALRKASGQLDLANAAVRRLETENAEMKAEMEASKLSASESVTACLEVAKREKKCLKKLLAWEKQKAKLQQDISDEKEKILKTQEILVQIRQCQKEAEVKWKEELKAKEEALALVEEERHSKEAAESNNKRKLETLRLKIEIDFQRHKDDLLRLEQELSRLKASAQSAELHNQSSTSPTSDSEGAKPQRETIARLLQELDNLEDLSEKEVNSNRECIVCMKDEVSIVFLPCAHQVMCASCSDEYGRKGKAICPCCRVQIQQRIRVFGASS* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0968 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 648 714 IPR013083 -
Gso5g0968 717 Pfam Zinc finger, C3HC4 type (RING finger) 660 708 - -
Gso5g0968 717 PANTHER OS05G0141500 PROTEIN 1 716 IPR046934 -
Gso5g0968 717 Pfam Family of unknown function (DUF6592) 82 204 IPR046527 -
Gso5g0968 717 Coils Coil 591 618 - -
Gso5g0968 717 ProSiteProfiles Zinc finger RING-type profile. 663 703 IPR001841 -
Gso5g0968 717 MobiDBLite consensus disorder prediction 612 633 - -
Gso5g0968 717 Coils Coil 632 659 - -
Gso5g0968 717 MobiDBLite consensus disorder prediction 1 28 - -
Gso5g0968 717 SUPERFAMILY RING/U-box 644 709 - -
Gso5g0968 717 Coils Coil 545 575 - -
Gso5g0968 717 Coils Coil 443 484 - -
Gso5g0968 717 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 716 - -
Gso5g0968 717 Coils Coil 506 533 - -
Gso5g0968 717 MobiDBLite consensus disorder prediction 612 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0968 Gso-Chr5 31813132 31820387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0968 654 713 C3H Transcription Factor Family AT1G73950 40.000 5.64e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0968 - - gmx:100777787 1344.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0968 5 31813132 31820387 Gso17g1303 17 13012305 13018203 GST
Gso11g0366 11 3149963 3153650 Gso5g0968 5 31813132 31820387 PCT
Gso5g0968 5 31813132 31820387 Gso11g0366 11 3149963 3153650 PCT