Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0962 ATGGACGCGCGCGAGCCGCTCCGCCCACCGCCGCCCACTATCATGGCGGGCCCCACATCCTACGGTTCCGCCAACATCGGCCCTAATTCCTCCGCCACCGTCTCCGCCATGCTGGCCCCCGCCACCGCGCAATTCCCCTTCGCCGCCGTGCCGCAACAGCACCAGCCTCCTCCCTCGTCGGAGCCGTTCCCCGCCTCCGCATACGACGGCTCCTCCTCGCCGATGAAGGCCTGCTCCCTCGCCAAGAAGAAGCGCGGCCGGCCCCGGAAATACTCGCCGGACGGTAACATTGCCCTCCGCCTCGCTCCAACCCATGCCTCGCCGCCCGCTGCTGCCTCCGGAGGCGGCGGCGGCGGCGATTCTGCCGGCATGGCGTCTGCCGATGCTCCGGCGAAGAAGCACCGCGGAAGGCCACCCGGGTCTGGGAAGAAACAGCTTGATGCCCTCGGTGCTGGTGGGGTTGGGTTTACGCCCCACGTGATCTTGGTGGAGTCTGGCGAGGACATCACAGCAAAAATTATGGCCTTTTCTCAGCAAGGGCCTCGGACAGTTTGTATTCTTTCTGCTATTGGCGCAATTGGTAATGTCACCCTTCAACAGTCTGCAATGACGGGTGGTATTGCTACGTATGAGGGCCGCTTTGAGATTATATCTTTATCAGGTTCTTTGCAGCAATCTGAAAATAACAGTGAACGCAGTAGAACATGCACTTTGAATGTAACCCTTGCAGGGTCCGATGGACGTGTTTTGGGTGGCGGAGTTGCTGGAACGCTAATTGCAGCATCAACTGTACAGGTCATTGTGGGCAGCTTTATTGCGGATGCGAAAAAGTCGAGCTCCAATGCCCTGAAATCTGGGTCTTCTTCTGCACCACCACCCCAAATGCTAACCTTTGGTTCATCCATGACCCCAAATAGTCCTACCTCTCAAGGGCCTTCAACTGAGTCCTCTGAGGAACAGGATCATAGTCCTTTTTGTAGGGGGCCAGGGCCTGGGTCTGGACATGGACTCTACAATAATGCTAGCCAGCCCGTTCATAATATGCCCATGTACCATCATCCACTATGGGCTGGCCAATCTCATCAGTAA 1089 0.5776 MDAREPLRPPPPTIMAGPTSYGSANIGPNSSATVSAMLAPATAQFPFAAVPQQHQPPPSSEPFPASAYDGSSSPMKACSLAKKKRGRPRKYSPDGNIALRLAPTHASPPAAASGGGGGGDSAGMASADAPAKKHRGRPPGSGKKQLDALGAGGVGFTPHVILVESGEDITAKIMAFSQQGPRTVCILSAIGAIGNVTLQQSAMTGGIATYEGRFEIISLSGSLQQSENNSERSRTCTLNVTLAGSDGRVLGGGVAGTLIAASTVQVIVGSFIADAKKSSSNALKSGSSSAPPPQMLTFGSSMTPNSPTSQGPSTESSEEQDHSPFCRGPGPGSGHGLYNNASQPVHNMPMYHHPLWAGQSHQ* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0962 362 CDD DUF296 157 271 IPR005175 -
Gso5g0962 362 MobiDBLite consensus disorder prediction 1 30 - -
Gso5g0962 362 MobiDBLite consensus disorder prediction 1 16 - -
Gso5g0962 362 MobiDBLite consensus disorder prediction 47 144 - -
Gso5g0962 362 SUPERFAMILY AF0104/ALDC/Ptd012-like 156 273 - -
Gso5g0962 362 Gene3D - 158 284 - -
Gso5g0962 362 ProSiteProfiles PPC domain profile profile. 152 293 IPR005175 -
Gso5g0962 362 MobiDBLite consensus disorder prediction 280 319 - -
Gso5g0962 362 Pfam Plants and Prokaryotes Conserved (PCC) domain 158 271 IPR005175 -
Gso5g0962 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 55 323 - -
Gso5g0962 362 MobiDBLite consensus disorder prediction 280 345 - -
Gso5g0962 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 55 323 IPR039605 GO:0003680
Gso5g0962 362 SMART AT_hook_2 82 94 IPR017956 GO:0003677
Gso5g0962 362 SMART AT_hook_2 132 144 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0962 Gso-Chr5 31628129 31633333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0962 81 362 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 51.290 3.01e-74 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0962 - - gmx:100789717 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0962 5 31628129 31633333 Gso17g1310 17 13103274 13109572 GST
Gso1g1706 1 53804398 53808045 Gso5g0962 5 31628129 31633333 PCT
Gso11g0369 11 3171579 3175569 Gso5g0962 5 31628129 31633333 PCT
Gso5g0962 5 31628129 31633333 Gso1g1706 1 53804398 53808045 PCT
Gso5g0962 5 31628129 31633333 Gso11g0369 11 3171579 3175569 PCT