Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0959 ATGGCTGGTTTGGATTTAGGAAGCGCGTCACGCTTTGTTCAGAATCTTCACTTACCGGACTTGCACTTGCAACAAAATTACCAGCAACCCCGGCACAAGCGCGATTCGGAGGAGCAAGAGACTCCTCCGAACCCGGGAACAGCGCTGGCGCCGTTCGACAACGATGATGACAAAAGCCAGGGCCTGGAGCTGGCTTCAGGCCCTGGGGACATCGTTGGACGGCGCCCACGCGGCAGACCTTCCGGGTCCAAGAACAAGCCGAAGCCACCGGTGATAATCACCCGGGAGAGCGCCAACACGCTGAGGGCGCACATTCTCGAGGTAGGAAGCGGCTCCGACGTCTTCGACTGTGTCACCGCTTATGCGCGGCGGCGCCAGCGCGGGATCTGCGTCCTCAGCGGCAGTGGTACCGTCACCAATGTCAGTCTCCGGCAGCCTGCGGCTGCCGGAGCCGTCGTCAGGCTGCACGGAAGGTTCGAGATTCTCTCTCTCTCCGGCTCGTTCCTCCCGCCGCCGGCTCCGCCGGGAGCCACCAGTCTCACAATCTACCTCGCCGGCGGGCAGGGCCAGGTCGTCGGAGGAAACGTCGTGGGAGAATTAACCGCGGCAGGGCCAGTAATCGTCATCGCAGCATCGTTCACCAACGTGGCTTACGAGAGGCTCCCCTTAGAAGAAGATGAACAACAACAACAACAGCTTCAGATTCAGTCACCCGCAACGACGTCATCTCAAGGAAACAACAACAATAACCCTTTCCCTGACCCTTCTTCAGGACTTCCCTTCTTCAACTTACCACTCAATATGCAGAATGTTCAGTTACCACCTTTTTGA 831 0.5848 MAGLDLGSASRFVQNLHLPDLHLQQNYQQPRHKRDSEEQETPPNPGTALAPFDNDDDKSQGLELASGPGDIVGRRPRGRPSGSKNKPKPPVIITRESANTLRAHILEVGSGSDVFDCVTAYARRRQRGICVLSGSGTVTNVSLRQPAAAGAVVRLHGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVVGELTAAGPVIVIAASFTNVAYERLPLEEDEQQQQQLQIQSPATTSSQGNNNNNPFPDPSSGLPFFNLPLNMQNVQLPPF* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0959 276 MobiDBLite consensus disorder prediction 227 259 - -
Gso5g0959 276 Pfam Plants and Prokaryotes Conserved (PCC) domain 102 215 IPR005175 -
Gso5g0959 276 SUPERFAMILY AF0104/ALDC/Ptd012-like 98 230 - -
Gso5g0959 276 MobiDBLite consensus disorder prediction 224 259 - -
Gso5g0959 276 Gene3D - 101 241 - -
Gso5g0959 276 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 1 275 - -
Gso5g0959 276 ProSiteProfiles PPC domain profile profile. 98 236 IPR005175 -
Gso5g0959 276 PIRSF ESCAROLA 7 272 IPR014476 GO:0003680
Gso5g0959 276 CDD DUF296 102 185 IPR005175 -
Gso5g0959 276 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 275 IPR014476 GO:0003680
Gso5g0959 276 MobiDBLite consensus disorder prediction 24 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0959 Gso-Chr5 31612209 31613767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0959 1 274 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 66.554 2.42e-96 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0959 - - gmx:100789193 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0959 5 31612209 31613767 Gso17g1312 17 13123124 13126571 GST
Gso1g1705 1 53791637 53792875 Gso5g0959 5 31612209 31613767 PCT
Gso11g0371 11 3187923 3189355 Gso5g0959 5 31612209 31613767 PCT
Gso5g0959 5 31612209 31613767 Gso1g1705 1 53791637 53792875 PCT
Gso5g0959 5 31612209 31613767 Gso11g0371 11 3187923 3189355 PCT