Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0958 ATGTGGAATCCTAGGGACCAATATCATCATCAGGACCAAGATCAAGATGAGTCGTGGGAAGTCAGAGCCTTCGCAGAAGACACCAGTAACATCATGGGCACCACCTGGCCTCCTAGGTCCTACTCCTGCACCTTCTGTAGAAAGGAGTTCCGTTCAGCACAAGCCCTCGGCGGCCACATGAACGTTCACCGCCGCGACCGCGCCCGCCTCCACCAAGCCTCAGTACCCCACAACAACCCCTCTTTTTCTCCCACACCCTCTTTTCTTAACATCTCTCATCAGGAGCCTTTTGTTGCAAATGGGGGTTTGTGCCTCTTGTACCCCTTTCCAAGCCCTAATAACAATGCTCCATTTTCCTCTCTAGGCCACAACAATAATGCATGTGGTGACTCACCTTCCACTGCTTTTTCAGTTTCTTCTTCTCATTCCCTTCAGTACCCTCCAATGAGGGTGCCTAGTTGCTCAGCTTCTACTTCCTTTGATTTCTCTGTGGCTCAGCCTGCTCCTCCTGCTGTAGGGAGGAATAATAATGGTTTCTCTTCTTCTTATTCTGGGAAAGTGGAACAAGAACCACCCACAAACGACTCTTCAACCCATCATGGTCATGGCCGCCACCACCATGATGAGGAGCTTGATCTAGAGCTCCGCTTGGGAAATAAATCAACATCAACGTGA 675 0.5007 MWNPRDQYHHQDQDQDESWEVRAFAEDTSNIMGTTWPPRSYSCTFCRKEFRSAQALGGHMNVHRRDRARLHQASVPHNNPSFSPTPSFLNISHQEPFVANGGLCLLYPFPSPNNNAPFSSLGHNNNACGDSPSTAFSVSSSHSLQYPPMRVPSCSASTSFDFSVAQPAPPAVGRNNNGFSSSYSGKVEQEPPTNDSSTHHGHGRHHHDEELDLELRLGNKSTST* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0958 224 Gene3D Classic Zinc Finger 29 81 - -
Gso5g0958 224 MobiDBLite consensus disorder prediction 170 224 - -
Gso5g0958 224 SUPERFAMILY beta-beta-alpha zinc fingers 38 68 IPR036236 -
Gso5g0958 224 MobiDBLite consensus disorder prediction 173 192 - -
Gso5g0958 224 SMART c2h2final6 41 63 IPR013087 -
Gso5g0958 224 PANTHER OS07G0101800 PROTEIN 1 222 - -
Gso5g0958 224 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 1 222 - -
Gso5g0958 224 MobiDBLite consensus disorder prediction 193 216 - -
Gso5g0958 224 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Gso5g0958 224 Pfam C2H2-type zinc finger 41 65 - -
Gso5g0958 224 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0958 Gso-Chr5 31502789 31504033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0958 1 75 C2H2 Transcription Factor Family AT4G17810 69.231 1.54e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso5g0958 zf-C2H2_6 2.9e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0958 - - gmx:102660237 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0958 5 31502789 31504033 Gso17g1314 17 13168772 13170557 GST
Gso1g1704 1 53772051 53773441 Gso5g0958 5 31502789 31504033 PCT
Gso11g0372 11 3207316 3209090 Gso5g0958 5 31502789 31504033 PCT
Gso5g0958 5 31502789 31504033 Gso1g1704 1 53772051 53773441 PCT
Gso5g0958 5 31502789 31504033 Gso11g0372 11 3207316 3209090 PCT