Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0955 ATGATGGAGGAATTGAACAAACCAATGGACGGATCAGCAACCAGCTGGTTATCCGATTTGGAAATGGATGATTACAATTTATTTCCAGATGAATGTCCCTTGAACTTGAACTTGTTTGATGACCAAGAGTTTCTCTCACAAGACATTGCTAGTGCCCTTCAAGAACAGACACAGACCTTGCAACAATCTTTGTCTTCAGAGTGCCCTTCAAAAACTGTGAGCAACTCATCCACCGATGAAACCACTTTTGACTTTGAGAGACCAGCCAAGTTGCTGAAAACGACAACAAGCAGTAGTTGTTGTAACTCTGACTCATCCACCATCACCAAAAGCCTTTCACCCAAACTTTCCCCATCGTCATCTTTTTCCTCATTTCAGTCTCAGATTCTCTCCTTTGACAATCCTAACCCAACCTCATCTTCCAACACCACCACCCAGTTTTATGGGTTTGACTGTACCTTAAACCCAACACAGAACGAGATGGTGTCAGTGTCAGTCCCCAACTTGAGAAAACCACGGTTCCCAACTCAAACCGCAAAAGGTTCACCGAAAAATCAAAACTTTGAAACAAAAACCTCACATGGTAAGAGGTCTCCAGCTCATGCTCAAGATCACATCATGGCTGAAAGAAAACGAAGAGAGAAACTCAGCCAGAGCTTCATTGCCCTTGCAGCTCTTGTTCCTGGCCTAAAGAAGATGGACAAGGCTTCTGTGTTAGGGGACGCTATCAAATATGTGAAAGAGCTTAAAGAGAGGTTAACAGTGCTTGAAGAGCAGAGCAAAAAATCAAGGGCAGAGTCAGTAGTGGTTCTGAACAAGCCAGACCTCTCTGGCGATGATGATTCTTCTTCATGTGATGAGAGCATTGGTGCTGATAGTGTCAGTGACTCACTGTTTGAAGTGGAATCAAGAGTATCAGGGAAGGAGATGCTGCTCAGGATCCACTGCCAGAAGCAAAAGGGTCTTTTGGTCAAATTACTGGCCGAGATTCAAAGCCATCACTTATTTGTTGCTAATAGCAGTGTATTACCCTTTGGTGATTCTATCCTTGACATTACCATAGTGGCTCAGATGGGAGAAAGTTACAATTTGACCACTAAGGAACTTGTCAAGAACCTACGCGTGGCTGCATTGAAGATATTGTCATAA 1149 0.4352 MMEELNKPMDGSATSWLSDLEMDDYNLFPDECPLNLNLFDDQEFLSQDIASALQEQTQTLQQSLSSECPSKTVSNSSTDETTFDFERPAKLLKTTTSSSCCNSDSSTITKSLSPKLSPSSSFSSFQSQILSFDNPNPTSSSNTTTQFYGFDCTLNPTQNEMVSVSVPNLRKPRFPTQTAKGSPKNQNFETKTSHGKRSPAHAQDHIMAERKRREKLSQSFIALAALVPGLKKMDKASVLGDAIKYVKELKERLTVLEEQSKKSRAESVVVLNKPDLSGDDDSSSCDESIGADSVSDSLFEVESRVSGKEMLLRIHCQKQKGLLVKLLAEIQSHHLFVANSSVLPFGDSILDITIVAQMGESYNLTTKELVKNLRVAALKILS* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0955 382 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 266 IPR036638 GO:0046983
Gso5g0955 382 PANTHER BHLH TRANSCRIPTION FACTOR 5 382 - -
Gso5g0955 382 Gene3D - 189 266 IPR036638 GO:0046983
Gso5g0955 382 Pfam Helix-loop-helix DNA-binding domain 204 249 IPR011598 GO:0046983
Gso5g0955 382 Coils Coil 239 266 - -
Gso5g0955 382 MobiDBLite consensus disorder prediction 190 211 - -
Gso5g0955 382 MobiDBLite consensus disorder prediction 173 211 - -
Gso5g0955 382 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 200 249 IPR011598 GO:0046983
Gso5g0955 382 CDD bHLH_AtNAI1_like 201 273 - -
Gso5g0955 382 SMART finulus 206 255 IPR011598 GO:0046983
Gso5g0955 382 MobiDBLite consensus disorder prediction 62 81 - -
Gso5g0955 382 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 5 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0955 Gso-Chr5 31385660 31388117 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0955 13 376 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.166 6.22e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso5g0955 HLH 4.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0955 - - gmx:100788128 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0955 5 31385660 31388117 Gso17g1316 17 13221409 13223709 GST